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Cobalt in PDB 6ffv: The Crystal Structure of Btum Cobalamin Transporter

Protein crystallography data

The structure of The Crystal Structure of Btum Cobalamin Transporter, PDB code: 6ffv was solved by S.Rempel, E.Colucci, J.W.De Gier, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.77 / 2.01
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.540, 87.540, 97.910, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 23.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the The Crystal Structure of Btum Cobalamin Transporter (pdb code 6ffv). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the The Crystal Structure of Btum Cobalamin Transporter, PDB code: 6ffv:

Cobalt binding site 1 out of 1 in 6ffv

Go back to Cobalt Binding Sites List in 6ffv
Cobalt binding site 1 out of 1 in the The Crystal Structure of Btum Cobalamin Transporter


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Crystal Structure of Btum Cobalamin Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:59.5
occ:1.00
CO A:B12301 0.0 59.5 1.0
N24 A:B12301 1.9 58.9 1.0
N21 A:B12301 1.9 65.3 1.0
N23 A:B12301 1.9 61.7 1.0
N22 A:B12301 1.9 52.4 1.0
SG A:CYS80 2.7 70.3 1.0
C19 A:B12301 2.8 55.7 1.0
C1 A:B12301 2.8 57.5 1.0
C14 A:B12301 2.9 54.2 1.0
C11 A:B12301 2.9 55.8 1.0
C4 A:B12301 2.9 50.8 1.0
C9 A:B12301 2.9 64.7 1.0
C16 A:B12301 3.0 51.7 1.0
C6 A:B12301 3.0 63.6 1.0
C10 A:B12301 3.3 56.0 1.0
C15 A:B12301 3.4 71.7 1.0
C5 A:B12301 3.4 60.1 1.0
CB A:CYS80 3.5 71.6 1.0
C20 A:B12301 3.6 57.2 1.0
C2 A:B12301 4.0 65.4 1.0
C13 A:B12301 4.1 67.6 1.0
C3 A:B12301 4.2 60.6 1.0
C18 A:B12301 4.2 56.3 1.0
C17 A:B12301 4.2 55.9 1.0
C8 A:B12301 4.3 56.5 1.0
C12 A:B12301 4.3 67.0 1.0
C7 A:B12301 4.3 67.4 1.0
C26 A:B12301 4.6 62.4 1.0
O A:HOH411 4.8 67.0 1.0
C53 A:B12301 4.9 63.1 1.0
N40 A:B12301 4.9 64.8 1.0
C35 A:B12301 4.9 56.2 1.0
C48 A:B12301 4.9 62.3 1.0
C54 A:B12301 5.0 52.9 1.0
C46 A:B12301 5.0 65.5 1.0

Reference:

S.Rempel, E.Colucci, J.W.De Gier, A.Guskov, D.J.Slotboom. Cysteine-Mediated Decyanation of Vitamin B12 By the Predicted Membrane Transporter Btum. Nat Commun V. 9 3038 2018.
ISSN: ESSN 2041-1723
PubMed: 30072686
DOI: 10.1038/S41467-018-05441-9
Page generated: Sun Dec 13 10:50:05 2020

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