Cobalt in the structure of Interactions of Deglycosylated Cobalt(III)-Pepleomycin With Dna, uc(Nmr), Minimized Average Structure (pdb 1ao1)

The binding sites of Cobalt atom in the structure of Interactions of Deglycosylated Cobalt(III)-Pepleomycin With Dna, uc(Nmr), Minimized Average Structure (pdb code 1ao1). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1ao1 structure was solved by J.CACERES-CORTES, H.SUGIYAMA, K.IKUDOME, I.SAITO, A.H.-J.WANG, with NMR in Solution technique. Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 1ao1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1ao1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Dt9, B: Pl113, conact list: Atom Atom Distance (A) Co H1' B:Dt9 4.76 Co C1 B:Pl113 3.80 Co CD B:Pl113 4.61 Co OH1 B:Pl113 3.24 Co C8 B:Pl113 4.60 Co H3X B:Pl113 3.24 Co HBA B:Pl113 4.96 Co C12 B:Pl113 2.85 Co NB B:Pl113 1.99 Co HO1 B:Pl113 3.88 Co C34 B:Pl113 4.87 Co C28 B:Pl113 4.14 Co C30 B:Pl113 4.00 Co H6 B:Pl113 3.74 Co H5X B:Pl113 4.80 Co H14 B:Pl113 4.35 Co NI B:Pl113 4.23 Co NC B:Pl113 2.03 Co O1 B:Pl113 3.76 Co H33 B:Pl113 4.29 Co NE B:Pl113 4.09 Co HNK B:Pl113 3.12 Co HNC B:Pl113 2.59 Co C5 B:Pl113 4.00 Co NG B:Pl113 1.92 Co H13 B:Pl113 4.04 Co H2 B:Pl113 3.82 Co C13 B:Pl113 3.17 Co HDB B:Pl113 4.10 Co C27 B:Pl113 2.94 Co HB2 B:Pl113 2.47 Co H29 B:Pl113 3.63 Co C7 B:Pl113 2.81 Co NK B:Pl113 3.86 Co C29 B:Pl113 3.16 Co H3E B:Pl113 3.82 Co HDC B:Pl113 4.20 Co C2 B:Pl113 2.89 Co NH B:Pl113 2.04 Co NJ B:Pl113 2.04 Co O2P B:Pl113 2.90 Co O12 B:Pl113 4.05 Co CO B:Pl113 0.00 Co C33 B:Pl113 4.86 Co C6 B:Pl113 2.96 Co H34 B:Pl113 4.20 Co H2P B:Pl113 3.77 Co C4 B:Pl113 4.98 Co O1P B:Pl113 1.95 Co C10 B:Pl113 2.84 Co H5E B:Pl113 3.88 Co C9 B:Pl113 4.14 Co C14 B:Pl113 3.29 Co HB1 B:Pl113 2.52 Co C3 B:Pl113 2.84 interactive model: