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Cobalt in PDB 1c4g: Phosphoglucomutase Vanadate Based Transition State Analog Complex

Enzymatic activity of Phosphoglucomutase Vanadate Based Transition State Analog Complex

All present enzymatic activity of Phosphoglucomutase Vanadate Based Transition State Analog Complex:
2.7.5.1;

Protein crystallography data

The structure of Phosphoglucomutase Vanadate Based Transition State Analog Complex, PDB code: 1c4g was solved by S.Baranidharan, W.J.Ray Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 174.420, 174.420, 101.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 29

Other elements in 1c4g:

The structure of Phosphoglucomutase Vanadate Based Transition State Analog Complex also contains other interesting chemical elements:

Vanadium (V) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Phosphoglucomutase Vanadate Based Transition State Analog Complex (pdb code 1c4g). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Phosphoglucomutase Vanadate Based Transition State Analog Complex, PDB code: 1c4g:

Cobalt binding site 1 out of 1 in 1c4g

Go back to Cobalt Binding Sites List in 1c4g
Cobalt binding site 1 out of 1 in the Phosphoglucomutase Vanadate Based Transition State Analog Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Phosphoglucomutase Vanadate Based Transition State Analog Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co562

b:2.0
occ:1.00
OV1 A:VG1563 2.0 33.4 1.0
OG A:SER116 2.2 32.1 1.0
OD2 A:ASP287 2.3 2.0 1.0
OD1 A:ASP291 2.3 13.6 1.0
OD2 A:ASP289 2.3 15.7 1.0
V A:VG1563 2.7 17.5 1.0
CG A:ASP289 3.1 12.9 1.0
CG A:ASP291 3.2 15.4 1.0
OD1 A:ASP289 3.3 11.2 1.0
CG A:ASP287 3.4 8.1 1.0
CB A:SER116 3.6 19.0 1.0
OV3 A:VG1563 3.6 28.6 1.0
OD2 A:ASP291 3.7 24.5 1.0
OV2 A:VG1563 3.7 24.4 1.0
CG A:ARG292 4.0 11.2 1.0
CA A:SER116 4.1 13.4 1.0
NZ A:LYS388 4.1 36.5 1.0
OD1 A:ASP287 4.2 26.0 1.0
CB A:ASP287 4.3 10.8 1.0
CB A:ASP291 4.4 2.0 1.0
O6 A:VG1563 4.4 21.8 1.0
NE A:ARG292 4.4 15.0 1.0
N A:ASP291 4.5 4.9 1.0
CD A:ARG292 4.5 11.4 1.0
CB A:ASP289 4.6 6.4 1.0
NZ A:LYS129 4.6 2.0 1.0
N A:ARG292 4.6 9.6 1.0
N A:HIS117 4.6 16.7 1.0
C A:SER116 4.7 11.6 1.0
CA A:ASP291 4.7 5.1 1.0
N A:ASP289 4.8 5.6 1.0
C A:ASP291 4.8 4.8 1.0
CE A:LYS388 4.9 19.4 1.0
CB A:ARG292 4.9 11.8 1.0

Reference:

S.Baranidharan, W.J.Ray Jr.. Structural Relationships at the Active Site of Phos in Analog Complexes To Be Published.
Page generated: Sun Dec 13 10:34:21 2020

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