Cobalt in the structure of Structure Of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites (pdb 1hv9)

The binding sites of Cobalt atom in the structure of Structure Of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites (pdb code 1hv9). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1hv9 structure was solved by L.R.OLSEN, S.L.RODERICK, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.2-2.1 Space group H32 a (A) 104.500 b (A) 104.500 c (A) 648.200 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 21.1 Rfree (%) 24.8 Cobalt Binding Sites: Cobalt binding site 1 out of 5 in 1hv9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1hv9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp406, A: Gln408, A: Co9031, A: Hoh5336, A: Hoh6107, A: Hoh6867, conact list: Atom Atom Distance (A) Co O A:Asp406 4.21 Co CB A:Asp406 4.10 Co OD2 A:Asp406 1.99 Co OD1 A:Asp406 3.32 Co CG A:Asp406 2.89 Co NE2 A:Gln408 4.24 Co CO A:Co9031 3.63 Co O A:Hoh5336 4.79 Co O A:Hoh6107 4.58 Co O A:Hoh6867 2.27 interactive model: Cobalt binding site 2 out of 5 in 1hv9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 1hv9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Gly381, A: Asp406, A: Co9030, A: Hoh4047, A: Hoh6036, A: Hoh6107, conact list: Atom Atom Distance (A) Co O A:Gly381 4.50 Co CB A:Asp406 4.48 Co OD2 A:Asp406 3.34 Co OD1 A:Asp406 2.23 Co CG A:Asp406 3.12 Co CA A:Asp406 4.95 Co CO A:Co9030 3.63 Co O A:Hoh4047 4.48 Co O A:Hoh6036 2.22 Co O A:Hoh6107 3.99 interactive model: Cobalt binding site 3 out of 5 in 1hv9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cobalt in the PDB 1hv9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Lys25, B: Asp105, B: Val226, B: Asn227, B: Ud13002, B: Hoh5026, B: Hoh5027, B: Hoh5073, conact list: Atom Atom Distance (A) Co CE B:Lys25 4.98 Co NZ B:Lys25 3.57 Co CB B:Asp105 4.38 Co OD2 B:Asp105 2.06 Co OD1 B:Asp105 3.40 Co CG B:Asp105 3.06 Co O B:Val226 4.16 Co N B:Val226 4.71 Co C B:Val226 4.55 Co N B:Asn227 4.87 Co CB B:Asn227 4.48 Co ND2 B:Asn227 3.38 Co OD1 B:Asn227 2.12 Co CG B:Asn227 3.07 Co CA B:Asn227 4.82 Co O5B B:Ud13002 4.20 Co PA B:Ud13002 3.32 Co O5' B:Ud13002 4.19 Co O2B B:Ud13002 2.24 Co O3A B:Ud13002 3.50 Co C5B B:Ud13002 4.22 Co O1' B:Ud13002 4.38 Co O2A B:Ud13002 2.16 Co O1B B:Ud13002 4.39 Co O6' B:Ud13002 3.90 Co C1' B:Ud13002 4.63 Co PB B:Ud13002 3.40 Co C5' B:Ud13002 4.87 Co O1A B:Ud13002 4.43 Co O B:Hoh5026 2.36 Co O B:Hoh5027 2.24 Co O B:Hoh5073 4.42 interactive model: Cobalt binding site 4 out of 5 in 1hv9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cobalt in the PDB 1hv9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Gly381, B: Asp406, B: Co9029, B: Hoh4027, B: Hoh4058, B: Hoh5045, conact list: Atom Atom Distance (A) Co O B:Gly381 4.61 Co CB B:Asp406 4.48 Co OD2 B:Asp406 3.47 Co OD1 B:Asp406 2.20 Co CG B:Asp406 3.16 Co CA B:Asp406 4.95 Co CO B:Co9029 3.53 Co O B:Hoh4027 4.65 Co O B:Hoh4058 4.03 Co O B:Hoh5045 2.25 interactive model: Cobalt binding site 5 out of 5 in 1hv9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cobalt in the PDB 1hv9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Asp406, B: Gln408, B: Co9028, B: Hoh4058, B: Hoh5428, B: Hoh6868, conact list: Atom Atom Distance (A) Co O B:Asp406 4.22 Co CB B:Asp406 4.07 Co OD2 B:Asp406 1.93 Co OD1 B:Asp406 3.14 Co CG B:Asp406 2.80 Co NE2 B:Gln408 4.16 Co CD B:Gln408 4.99 Co CO B:Co9028 3.53 Co O B:Hoh4058 4.56 Co O B:Hoh5428 4.75 Co O B:Hoh6868 2.36 interactive model: