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Cobalt in PDB 1hv9: Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites

Enzymatic activity of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites

All present enzymatic activity of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites:
2.7.7.23;

Protein crystallography data

The structure of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites, PDB code: 1hv9 was solved by L.R.Olsen, S.L.Roderick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.25 / 2.10
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 104.500, 104.500, 648.200, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 24.8

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites (pdb code 1hv9). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 5 binding sites of Cobalt where determined in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites, PDB code: 1hv9:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5;

Cobalt binding site 1 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 1 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co9030

b:36.2
occ:0.50
 OD2 A:ASP406 2.0 16.7 1.0
O A:HOH6867 2.3 46.6 1.0
CG A:ASP406 2.9 14.0 1.0
OD1 A:ASP406 3.3 14.8 1.0
CO A:CO9031 3.6 33.8 0.5
CB A:ASP406 4.1 11.9 1.0
O A:ASP406 4.2 12.3 1.0
NE2 A:GLN408 4.2 26.2 1.0
O A:HOH6107 4.6 24.3 1.0
O A:HOH5336 4.8 36.1 1.0

Cobalt binding site 2 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 2 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co9031

b:33.8
occ:0.50
 O A:HOH6036 2.2 10.7 1.0
OD1 A:ASP406 2.2 14.8 1.0
CG A:ASP406 3.1 14.0 1.0
OD2 A:ASP406 3.3 16.7 1.0
CO A:CO9030 3.6 36.2 0.5
O A:HOH6107 4.0 24.3 1.0
CB A:ASP406 4.5 11.9 1.0
O A:HOH4047 4.5 18.3 1.0
O A:GLY381 4.5 9.8 1.0
CA A:ASP406 5.0 11.6 1.0

Cobalt binding site 3 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 3 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9027

b:30.9
occ:1.00
 OD2 B:ASP105 2.1 14.2 1.0
OD1 B:ASN227 2.1 16.4 1.0
O2A B:UD13002 2.2 17.9 1.0
O B:HOH5027 2.2 16.0 1.0
O2B B:UD13002 2.2 16.1 1.0
O B:HOH5026 2.4 15.0 1.0
CG B:ASP105 3.1 13.7 1.0
CG B:ASN227 3.1 14.1 1.0
PA B:UD13002 3.3 17.9 1.0
ND2 B:ASN227 3.4 12.5 1.0
PB B:UD13002 3.4 16.4 1.0
OD1 B:ASP105 3.4 15.0 1.0
O3A B:UD13002 3.5 17.2 1.0
NZ B:LYS25 3.6 13.9 1.0
O6' B:UD13002 3.9 16.6 1.0
O B:VAL226 4.2 12.7 1.0
O5' B:UD13002 4.2 17.8 1.0
O5B B:UD13002 4.2 16.8 1.0
C5B B:UD13002 4.2 14.4 1.0
O1' B:UD13002 4.4 17.2 1.0
CB B:ASP105 4.4 12.5 1.0
O1B B:UD13002 4.4 15.8 1.0
O B:HOH5073 4.4 16.9 1.0
O1A B:UD13002 4.4 18.4 1.0
CB B:ASN227 4.5 13.9 1.0
C B:VAL226 4.6 12.8 1.0
C1' B:UD13002 4.6 16.3 1.0
N B:VAL226 4.7 13.6 1.0
CA B:ASN227 4.8 13.3 1.0
C5' B:UD13002 4.9 16.4 1.0
N B:ASN227 4.9 12.1 1.0
CE B:LYS25 5.0 16.7 1.0

Cobalt binding site 4 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 4 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9028

b:37.8
occ:0.50
 OD1 B:ASP406 2.2 16.8 1.0
O B:HOH5045 2.3 18.4 1.0
CG B:ASP406 3.2 16.6 1.0
OD2 B:ASP406 3.5 18.4 1.0
CO B:CO9029 3.5 32.0 0.5
O B:HOH4058 4.0 19.9 1.0
CB B:ASP406 4.5 15.1 1.0
O B:GLY381 4.6 13.2 1.0
O B:HOH4027 4.7 19.5 1.0
CA B:ASP406 4.9 14.7 1.0

Cobalt binding site 5 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 5 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9029

b:32.0
occ:0.50
 OD2 B:ASP406 1.9 18.4 1.0
O B:HOH6868 2.4 35.5 1.0
CG B:ASP406 2.8 16.6 1.0
OD1 B:ASP406 3.1 16.8 1.0
CO B:CO9028 3.5 37.8 0.5
CB B:ASP406 4.1 15.1 1.0
NE2 B:GLN408 4.2 28.8 1.0
O B:ASP406 4.2 17.0 1.0
O B:HOH4058 4.6 19.9 1.0
O B:HOH5428 4.8 34.6 1.0
CD B:GLN408 5.0 28.2 1.0

Reference:

L.R.Olsen, S.L.Roderick. Structure of the Escherichia Coli Glmu Pyrophosphorylase and Acetyltransferase Active Sites. Biochemistry V. 40 1913 2001.
ISSN: ISSN 0006-2960
PubMed: 11329257
DOI: 10.1021/BI002503N
Page generated: Tue Jul 30 14:22:44 2024

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