Atomistry » Cobalt » PDB 1hv9-1nr5 » 1hv9
Atomistry »
  Cobalt »
    PDB 1hv9-1nr5 »
      1hv9 »

Cobalt in PDB 1hv9: Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites

Enzymatic activity of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites

All present enzymatic activity of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites:
2.7.7.23;

Protein crystallography data

The structure of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites, PDB code: 1hv9 was solved by L.R.Olsen, S.L.Roderick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.25 / 2.10
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 104.500, 104.500, 648.200, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 24.8

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites (pdb code 1hv9). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 5 binding sites of Cobalt where determined in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites, PDB code: 1hv9:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5;

Cobalt binding site 1 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 1 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co9030

b:36.2
occ:0.50
 OD2 A:ASP406 2.0 16.7 1.0
O A:HOH6867 2.3 46.6 1.0
CG A:ASP406 2.9 14.0 1.0
OD1 A:ASP406 3.3 14.8 1.0
CO A:CO9031 3.6 33.8 0.5
CB A:ASP406 4.1 11.9 1.0
O A:ASP406 4.2 12.3 1.0
NE2 A:GLN408 4.2 26.2 1.0
O A:HOH6107 4.6 24.3 1.0
O A:HOH5336 4.8 36.1 1.0

Cobalt binding site 2 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 2 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co9031

b:33.8
occ:0.50
 O A:HOH6036 2.2 10.7 1.0
OD1 A:ASP406 2.2 14.8 1.0
CG A:ASP406 3.1 14.0 1.0
OD2 A:ASP406 3.3 16.7 1.0
CO A:CO9030 3.6 36.2 0.5
O A:HOH6107 4.0 24.3 1.0
CB A:ASP406 4.5 11.9 1.0
O A:HOH4047 4.5 18.3 1.0
O A:GLY381 4.5 9.8 1.0
CA A:ASP406 5.0 11.6 1.0

Cobalt binding site 3 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 3 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9027

b:30.9
occ:1.00
 OD2 B:ASP105 2.1 14.2 1.0
OD1 B:ASN227 2.1 16.4 1.0
O2A B:UD13002 2.2 17.9 1.0
O B:HOH5027 2.2 16.0 1.0
O2B B:UD13002 2.2 16.1 1.0
O B:HOH5026 2.4 15.0 1.0
CG B:ASP105 3.1 13.7 1.0
CG B:ASN227 3.1 14.1 1.0
PA B:UD13002 3.3 17.9 1.0
ND2 B:ASN227 3.4 12.5 1.0
PB B:UD13002 3.4 16.4 1.0
OD1 B:ASP105 3.4 15.0 1.0
O3A B:UD13002 3.5 17.2 1.0
NZ B:LYS25 3.6 13.9 1.0
O6' B:UD13002 3.9 16.6 1.0
O B:VAL226 4.2 12.7 1.0
O5' B:UD13002 4.2 17.8 1.0
O5B B:UD13002 4.2 16.8 1.0
C5B B:UD13002 4.2 14.4 1.0
O1' B:UD13002 4.4 17.2 1.0
CB B:ASP105 4.4 12.5 1.0
O1B B:UD13002 4.4 15.8 1.0
O B:HOH5073 4.4 16.9 1.0
O1A B:UD13002 4.4 18.4 1.0
CB B:ASN227 4.5 13.9 1.0
C B:VAL226 4.6 12.8 1.0
C1' B:UD13002 4.6 16.3 1.0
N B:VAL226 4.7 13.6 1.0
CA B:ASN227 4.8 13.3 1.0
C5' B:UD13002 4.9 16.4 1.0
N B:ASN227 4.9 12.1 1.0
CE B:LYS25 5.0 16.7 1.0

Cobalt binding site 4 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 4 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9028

b:37.8
occ:0.50
 OD1 B:ASP406 2.2 16.8 1.0
O B:HOH5045 2.3 18.4 1.0
CG B:ASP406 3.2 16.6 1.0
OD2 B:ASP406 3.5 18.4 1.0
CO B:CO9029 3.5 32.0 0.5
O B:HOH4058 4.0 19.9 1.0
CB B:ASP406 4.5 15.1 1.0
O B:GLY381 4.6 13.2 1.0
O B:HOH4027 4.7 19.5 1.0
CA B:ASP406 4.9 14.7 1.0

Cobalt binding site 5 out of 5 in 1hv9

Go back to Cobalt Binding Sites List in 1hv9
Cobalt binding site 5 out of 5 in the Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Structure of E. Coli Glmu: Analysis of Pyrophosphorylase and Acetyltransferase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co9029

b:32.0
occ:0.50
 OD2 B:ASP406 1.9 18.4 1.0
O B:HOH6868 2.4 35.5 1.0
CG B:ASP406 2.8 16.6 1.0
OD1 B:ASP406 3.1 16.8 1.0
CO B:CO9028 3.5 37.8 0.5
CB B:ASP406 4.1 15.1 1.0
NE2 B:GLN408 4.2 28.8 1.0
O B:ASP406 4.2 17.0 1.0
O B:HOH4058 4.6 19.9 1.0
O B:HOH5428 4.8 34.6 1.0
CD B:GLN408 5.0 28.2 1.0

Reference:

L.R.Olsen, S.L.Roderick. Structure of the Escherichia Coli Glmu Pyrophosphorylase and Acetyltransferase Active Sites. Biochemistry V. 40 1913 2001.
ISSN: ISSN 0006-2960
PubMed: 11329257
DOI: 10.1021/BI002503N
Page generated: Tue Jul 30 14:22:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy