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Cobalt in PDB 1ih1: Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms

Protein crystallography data

The structure of Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms, PDB code: 1ih1 was solved by J.M.Vargason, K.Henderson, P.S.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 42.595, 42.595, 63.503, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 24.5

Other elements in 1ih1:

The structure of Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms (pdb code 1ih1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms, PDB code: 1ih1:

Cobalt binding site 1 out of 1 in 1ih1

Go back to Cobalt Binding Sites List in 1ih1
Cobalt binding site 1 out of 1 in the Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the B-Dna Hexamer Ggcgcc with Cobalt Hexamine Resolved to 2.0 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co14

b:29.1
occ:0.50
CO A:NCO14 0.0 29.1 0.5
N7 A:DG1 2.2 26.0 1.0
N2 A:NCO14 2.2 14.4 1.0
N1 A:NCO14 2.3 19.7 1.0
C8 A:DG1 3.1 27.0 1.0
C5 A:DG1 3.3 26.6 1.0
O6 A:DG1 3.6 22.6 1.0
C6 A:DG1 3.8 27.4 1.0
O A:HOH18 4.1 33.1 1.0
N9 A:DG1 4.3 30.6 1.0
C4 A:DG1 4.4 26.9 1.0
O6 A:DG2 4.5 28.5 1.0

Reference:

J.M.Vargason, K.Henderson, P.S.Ho. A Crystallographic Map of the Transition From B-Dna to A-Dna. Proc.Natl.Acad.Sci.Usa V. 98 7265 2001.
ISSN: ISSN 0027-8424
PubMed: 11390969
DOI: 10.1073/PNAS.121176898
Page generated: Sun Dec 13 10:35:09 2020

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