Chemical elements
  Cobalt
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    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
      1k98
      1kc2
      1kej
      1l8x
      1lfm
      1lna
      1m38
      1m5a
      1m77
      1mat
      1mdg
      1mf5
      1mmf
      1mtg
      1mxk
      1n2z
      1n4a
      1n5o
      1nqh
      1nr5
      1nyi
      1o55
      1obx
      1of8
      1ofa
      1omk
      1ovu
      1ovv
      1p24
      1pbz
      1pyz
      1q29
      1q2b
      1qca
      1qk0
      1qq0
      1qre
      1qrf
      1qt1
      1qv0
      1qv1
      1qw7
      1qxo
      1qxw
      1qxy
      1qxz
      1qzl
      1qzy
      1r0h
      1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Crystal Structure of Murine Terminal Deoxynucleotidyl Transferase Complexed With Ddatp (pdb 1kej)






The binding sites of Cobalt atom in the structure of Crystal Structure of Murine Terminal Deoxynucleotidyl Transferase Complexed With Ddatp (pdb code 1kej). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 1kej structure was solved by M.DELARUE, J.B.BOULE, J.LESCAR, N.EXPERT-BEZANCON, N.JOURDAN, N.SUKUMAR, F.ROUGEON, C.PAPANICOLAOU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)30.0-3.0
Space groupP212121
a (A)46.900
b (A)85.300
c (A)108.300
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)26.3
Rfree (%)30.9


Cobalt Binding Sites:

Cobalt binding site 1 out of 2 in 1kej


Cobalt binding site 1 out of 2 in 1kej
Click to enlarge
stereopicture of Cobalt binding site 1 out of 2 in 1kej
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1kej. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly332, A: Gly333, A: Asp343, A: Val344, A: Asp345, A: Co702, A: Dad601,

conact list:


AtomAtomDistance (A)
CoCA A:Gly3324.97
CoN A:Gly3334.61
CoO A:Asp3433.21
CoN A:Asp3434.03
CoCB A:Asp3434.06
CoOD2 A:Asp3433.53
CoC A:Asp3433.73
CoOD1 A:Asp3431.73
CoCG A:Asp3432.90
CoCA A:Asp3434.13
CoN A:Val3444.55
CoC A:Val3444.88
CoN A:Asp3454.22
CoCB A:Asp3453.95
CoOD2 A:Asp3451.81
CoOD1 A:Asp3453.45
CoCG A:Asp3452.84
CoCA A:Asp3454.67
CoCO A:Co7023.54
CoPG A:Dad6013.19
CoO3B A:Dad6013.76
CoO2G A:Dad6011.74
CoPA A:Dad6013.68
CoO3G A:Dad6014.11
CoO1B A:Dad6014.89
CoPB A:Dad6013.53
CoO5' A:Dad6014.47
CoO2B A:Dad6012.70
CoO3A A:Dad6013.39
CoO1G A:Dad6013.97
CoO1A A:Dad6013.08

interactive model:


Cobalt binding site 2 out of 2 in 1kej


Cobalt binding site 2 out of 2 in 1kej
Click to enlarge
stereopicture of Cobalt binding site 2 out of 2 in 1kej
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 1kej. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp343, A: Asp345, A: Arg432, A: Asp434, A: Trp450, A: Co701, A: Dad601,

conact list:


AtomAtomDistance (A)
CoCB A:Asp3434.60
CoOD2 A:Asp3432.45
CoOD1 A:Asp3433.22
CoCG A:Asp3433.17
CoCB A:Asp3454.67
CoOD2 A:Asp3453.28
CoOD1 A:Asp3452.42
CoCG A:Asp3453.20
CoNH2 A:Arg4324.19
CoCB A:Asp4344.16
CoOD2 A:Asp4344.38
CoOD1 A:Asp4342.28
CoCG A:Asp4343.44
CoCZ3 A:Trp4504.89
CoCO A:Co7013.54
CoO2G A:Dad6014.48
CoPA A:Dad6013.35
CoO2A A:Dad6014.31
CoC5' A:Dad6014.49
CoO5' A:Dad6013.51
CoO3A A:Dad6014.30
CoO1A A:Dad6012.03

interactive model:




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