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Cobalt in PDB 1qzl: Gcatgct + Cobalt

Protein crystallography data

The structure of Gcatgct + Cobalt, PDB code: 1qzl was solved by C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.57 / 2.85
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 24.789, 24.789, 91.818, 90.00, 90.00, 120.00
R / Rfree (%) 24 / 33.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Gcatgct + Cobalt (pdb code 1qzl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Gcatgct + Cobalt, PDB code: 1qzl:

Cobalt binding site 1 out of 1 in 1qzl

Go back to Cobalt Binding Sites List in 1qzl
Cobalt binding site 1 out of 1 in the Gcatgct + Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Gcatgct + Cobalt within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Co101

b:45.6
occ:1.00
N7 X:DG1 2.5 35.0 1.0
C8 X:DG1 3.3 34.8 1.0
C5 X:DG1 3.6 23.9 1.0
O6 X:DG1 3.7 35.1 1.0
C6 X:DG1 4.1 32.7 1.0
N4 X:DC2 4.1 14.5 1.0
N9 X:DG1 4.5 37.6 1.0
C4 X:DG1 4.7 33.2 1.0
C4 X:DC2 4.8 26.1 1.0
C5 X:DC2 4.9 24.3 1.0

Reference:

C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes. Metal Ion Distribution and Stabilisation of the Dna Quadruplex Structure Formed By D(Gcatgct) To Be Published.
Page generated: Tue Jul 30 14:33:09 2024

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