Atomistry » Cobalt » PDB 1nyi-1rr2 » 1rmq
Atomistry »
  Cobalt »
    PDB 1nyi-1rr2 »
      1rmq »

Cobalt in PDB 1rmq: Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate

Enzymatic activity of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate

All present enzymatic activity of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate:
3.1.3.2;

Protein crystallography data

The structure of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate, PDB code: 1rmq was solved by V.Calderone, C.Forleo, M.Benvenuti, G.M.Rossolini, M.C.Thaller, S.Mangani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.732, 66.447, 91.523, 90.00, 121.30, 90.00
R / Rfree (%) 18.3 / 23

Other elements in 1rmq:

The structure of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate also contains other interesting chemical elements:

Osmium (Os) 4 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate (pdb code 1rmq). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate, PDB code: 1rmq:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 1rmq

Go back to Cobalt Binding Sites List in 1rmq
Cobalt binding site 1 out of 2 in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:17.7
occ:1.00
OD2 A:ASP44 2.1 15.4 1.0
O A:HOH408 2.1 16.6 1.0
OD1 A:ASP167 2.1 16.5 1.0
O A:ASP46 2.2 16.5 1.0
O A:HOH428 2.2 15.8 1.0
CG A:ASP44 3.1 19.6 1.0
CG A:ASP167 3.1 16.1 1.0
OS A:OS402 3.2 84.0 1.0
C A:ASP46 3.3 18.4 1.0
OD2 A:ASP167 3.4 15.3 1.0
OD1 A:ASP44 3.5 15.9 1.0
OG A:SER168 3.9 19.5 1.0
OG1 A:THR48 3.9 18.2 1.0
N A:ASP46 3.9 18.0 1.0
CA A:ASP46 4.0 17.5 1.0
OD2 A:ASP171 4.0 18.4 1.0
O A:HOH420 4.1 19.6 1.0
CB A:ASP46 4.1 17.6 1.0
CB A:ASP44 4.4 17.5 1.0
CB A:ASP167 4.4 19.1 1.0
N A:ASP47 4.4 17.9 1.0
N A:ASP167 4.5 18.5 1.0
CB A:ASP47 4.6 16.2 1.0
O A:HOH442 4.6 21.8 1.0
N A:SER168 4.7 20.8 1.0
N A:THR48 4.7 16.1 1.0
C A:ILE45 4.8 17.8 1.0
CA A:ASP47 4.8 16.8 1.0
C A:ASP47 4.8 16.4 1.0
CB A:SER168 4.9 19.7 1.0
CB A:THR48 4.9 17.5 1.0
CA A:ASP167 5.0 18.5 1.0

Cobalt binding site 2 out of 2 in 1rmq

Go back to Cobalt Binding Sites List in 1rmq
Cobalt binding site 2 out of 2 in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase with Osmiate Mimicking the Catalytic Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co403

b:19.2
occ:1.00
OD2 B:ASP44 2.0 18.2 1.0
O B:HOH495 2.0 22.9 1.0
OD1 B:ASP167 2.1 14.0 1.0
O B:HOH551 2.1 13.9 1.0
O B:ASP46 2.2 14.5 1.0
CG B:ASP44 3.0 21.9 1.0
CG B:ASP167 3.1 18.8 1.0
C B:ASP46 3.3 15.5 1.0
OD2 B:ASP167 3.3 18.6 1.0
OD1 B:ASP44 3.3 16.9 1.0
OS B:OS404 3.4 95.4 1.0
O B:HOH549 3.5 23.6 1.0
CA B:ASP46 3.9 16.7 1.0
N B:ASP46 3.9 16.8 1.0
OG B:SER168 3.9 21.2 1.0
OG1 B:THR48 4.0 17.3 1.0
O B:HOH430 4.0 17.4 1.0
OD2 B:ASP171 4.1 25.6 1.0
CB B:ASP46 4.1 16.1 1.0
O B:HOH548 4.1 31.1 1.0
CB B:ASP44 4.4 20.4 1.0
N B:ASP47 4.4 17.5 1.0
CB B:ASP167 4.4 16.0 1.0
CB B:ASP47 4.5 17.9 1.0
N B:ASP167 4.5 18.5 1.0
N B:SER168 4.7 20.0 1.0
C B:ILE45 4.7 18.5 1.0
CA B:ASP47 4.7 17.5 1.0
C B:ASP47 4.7 17.7 1.0
N B:THR48 4.8 16.3 1.0
O B:HOH442 4.8 20.6 1.0
CB B:SER168 4.9 20.0 1.0
CB B:THR48 4.9 17.5 1.0
CA B:ASP167 5.0 17.8 1.0

Reference:

V.Calderone, C.Forleo, M.Benvenuti, G.M.Rossolini, M.C.Thaller, S.Mangani. Insights in the Catalytic Mechanism of Apha From Escherichia Coli To Be Published.
Page generated: Sun Dec 13 10:35:53 2020

Last articles

Cl in 6COG
Cl in 6CST
Cl in 6CTW
Cl in 6CTZ
Cl in 6CTT
Cl in 6CSP
Cl in 6CU9
Cl in 6CTX
Cl in 6CTU
Cl in 6CTP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy