Atomistry » Cobalt » PDB 1nyi-1rr2 » 1rqb
Atomistry »
  Cobalt »
    PDB 1nyi-1rr2 »
      1rqb »

Cobalt in PDB 1rqb: Propionibacterium Shermanii Transcarboxylase 5S Subunit

Enzymatic activity of Propionibacterium Shermanii Transcarboxylase 5S Subunit

All present enzymatic activity of Propionibacterium Shermanii Transcarboxylase 5S Subunit:
2.1.3.1;

Protein crystallography data

The structure of Propionibacterium Shermanii Transcarboxylase 5S Subunit, PDB code: 1rqb was solved by P.R.Hall, R.Zheng, L.Antony, M.Pusztai-Carey, P.R.Carey, V.C.Yee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.12 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 96.464, 145.938, 79.008, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.1

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Propionibacterium Shermanii Transcarboxylase 5S Subunit (pdb code 1rqb). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Propionibacterium Shermanii Transcarboxylase 5S Subunit, PDB code: 1rqb:

Cobalt binding site 1 out of 1 in 1rqb

Go back to Cobalt Binding Sites List in 1rqb
Cobalt binding site 1 out of 1 in the Propionibacterium Shermanii Transcarboxylase 5S Subunit


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Propionibacterium Shermanii Transcarboxylase 5S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co529

b:12.0
occ:1.00
OD1 A:ASP23 2.0 11.7 1.0
NE2 A:HIS217 2.1 6.5 1.0
OQ2 A:KCX184 2.1 14.9 1.0
NE2 A:HIS215 2.2 8.9 1.0
OQ1 A:KCX184 2.2 15.4 1.0
O A:HOH885 2.3 11.4 1.0
CX A:KCX184 2.5 16.0 1.0
CG A:ASP23 3.0 10.2 1.0
CE1 A:HIS217 3.1 9.5 1.0
CE1 A:HIS215 3.1 9.3 1.0
CD2 A:HIS217 3.1 8.7 1.0
CD2 A:HIS215 3.2 7.7 1.0
OD2 A:ASP23 3.4 11.3 1.0
NZ A:KCX184 3.9 13.2 1.0
NE2 A:HIS251 3.9 9.3 1.0
ND1 A:HIS217 4.2 9.5 1.0
ND1 A:HIS215 4.3 9.0 1.0
NH2 A:ARG22 4.3 9.9 1.0
CG A:HIS217 4.3 8.5 1.0
O A:HOH555 4.3 17.1 1.0
CG A:HIS215 4.3 11.3 1.0
CB A:ASP23 4.3 10.9 1.0
O A:HOH563 4.4 20.0 1.0
O A:HOH616 4.5 35.0 1.0
CG A:MSE186 4.7 33.8 1.0
CD2 A:HIS251 4.7 8.7 1.0
CE A:KCX184 4.8 18.6 1.0
CA A:MSE186 4.9 17.4 1.0
CB A:MSE186 4.9 21.2 1.0
CE1 A:HIS251 4.9 8.4 1.0

Reference:

P.R.Hall, R.Zheng, L.Antony, M.Pusztai-Carey, P.R.Carey, V.C.Yee. Transcarboxylase 5S Structures: Assembly and Catalytic Mechanism of A Multienzyme Complex Subunit. Embo J. V. 23 3621 2004.
ISSN: ISSN 0261-4189
PubMed: 15329673
DOI: 10.1038/SJ.EMBOJ.7600373
Page generated: Tue Jul 30 14:34:50 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy