Cobalt in PDB 1rqh: Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid

All present enzymatic activity of Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid:
2.1.3.1;

The structure of Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid, PDB code: 1rqh was solved by P.R.Hall, R.Zheng, L.Antony, M.Pusztai-Carey, P.R.Carey, V.C.Yee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.09 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	96.025, 145.720, 78.747, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 19.7

The binding sites of Cobalt atom in the Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid (pdb code 1rqh). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid, PDB code: 1rqh:

Cobalt binding site 1 out of 1 in the Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Propionibacterium Shermanii Transcarboxylase 5S Subunit Bound to Pyruvic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Co601 b:28.6 occ:1.00 OD1 A:ASP23 2.0 20.9 1.0 OQ1 A:LYS184 2.1 16.4 0.5 NE2 A:HIS217 2.2 12.0 1.0 NE2 A:HIS215 2.2 16.6 1.0 OQ2 A:LYS184 2.3 10.7 0.5 O A:HOH670 2.4 31.9 1.0 CX A:LYS184 2.5 13.3 0.5 CG A:ASP23 3.0 19.1 1.0 CE1 A:HIS215 3.1 14.9 1.0 CE1 A:HIS217 3.1 16.1 1.0 CD2 A:HIS217 3.2 15.0 1.0 CD2 A:HIS215 3.2 12.6 1.0 OD2 A:ASP23 3.3 19.1 1.0 NE2 A:HIS251 3.8 14.1 1.0 NZ A:LYS184 3.9 18.0 0.5 ND1 A:HIS215 4.2 11.3 1.0 ND1 A:HIS217 4.3 15.6 1.0 CG A:HIS217 4.3 15.6 1.0 CG A:HIS215 4.3 14.9 1.0 CB A:ASP23 4.3 19.0 1.0 NH2 A:ARG22 4.4 18.9 1.0 O3 A:PYR602 4.4 18.1 0.5 O A:HOH613 4.5 19.9 1.0 CD2 A:HIS251 4.6 12.2 1.0 CG A:MET186 4.7 31.4 0.5 CE A:MET186 4.8 30.5 0.5 CE A:LYS184 4.8 20.6 0.5 CA A:MET186 4.8 23.5 1.0 CG A:MET186 4.9 27.9 0.5 CE1 A:HIS251 4.9 14.1 1.0 CB A:MET186 4.9 24.4 0.5 CB A:MET186 4.9 22.1 0.5 CG A:LYS184 5.0 14.4 0.5 OG A:SER27 5.0 23.7 1.0

P.R.Hall, R.Zheng, L.Antony, M.Pusztai-Carey, P.R.Carey, V.C.Yee. Transcarboxylase 5S Structures: Assembly and Catalytic Mechanism of A Multienzyme Complex Subunit. Embo J. V. 23 3621 2004.
ISSN: ISSN 0261-4189
PubMed: 15329673
DOI: 10.1038/SJ.EMBOJ.7600373