Cobalt in PDB 1sj1: The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus

The structure of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus, PDB code: 1sj1 was solved by M.S.Nielsen, P.Harris, B.L.Ooi, H.E.Christensen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.64 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	31.230, 47.511, 52.029, 90.00, 103.86, 90.00
R / Rfree (%)	19.4 / 22.3

The structure of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus also contains other interesting chemical elements:

Iron

(Fe)

6 atoms

The binding sites of Cobalt atom in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus (pdb code 1sj1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus, PDB code: 1sj1:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;

Cobalt binding site 1 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co71 b:14.9 occ:1.00 CO A:NCO71 0.0 14.9 1.0 N5 A:NCO71 2.0 18.7 1.0 N3 A:NCO71 2.0 22.9 1.0 N2 A:NCO71 2.0 22.4 1.0 N1 A:NCO71 2.0 17.0 1.0 N6 A:NCO71 2.0 21.4 1.0 N4 A:NCO71 2.0 19.7 1.0 OG A:SER59 3.9 14.7 1.0 O A:GLU54 4.0 17.1 1.0 O A:CYS56 4.0 9.6 1.0 O B:HOH84 4.1 20.8 1.0 C A:GLU54 4.8 14.1 1.0

Cobalt binding site 2 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co73 b:9.1 occ:0.40 CO A:NCO73 0.0 9.1 0.4 N4 A:NCO73 1.1 18.4 0.6 CO A:NCO73 1.4 15.1 0.6 N6 A:NCO73 1.7 17.6 0.6 N3 A:NCO73 2.0 13.7 0.4 N1 A:NCO73 2.0 13.9 0.4 N2 A:NCO73 2.0 14.0 0.4 N4 A:NCO73 2.0 13.7 0.4 N6 A:NCO73 2.0 12.9 0.4 N5 A:NCO73 2.0 9.2 0.4 N1 A:NCO73 2.4 18.4 0.6 N3 A:NCO73 2.5 17.9 0.6 N5 A:NCO73 3.0 17.0 0.6 N2 A:NCO73 3.3 16.8 0.6 OE2 A:GLU41 4.1 24.1 1.0 OE1 A:GLU41 4.3 23.6 1.0 CD A:GLU41 4.6 22.3 1.0 O A:HOH103 4.9 23.6 1.0 O A:HOH95 4.9 34.2 1.0

Cobalt binding site 3 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co73 b:15.1 occ:0.60 CO A:NCO73 0.0 15.1 0.6 CO A:NCO73 1.4 9.1 0.4 N2 A:NCO73 1.6 14.0 0.4 N6 A:NCO73 1.9 12.9 0.4 N2 A:NCO73 2.0 16.8 0.6 N5 A:NCO73 2.0 17.0 0.6 N4 A:NCO73 2.0 18.4 0.6 N1 A:NCO73 2.0 18.4 0.6 N6 A:NCO73 2.0 17.6 0.6 N3 A:NCO73 2.0 17.9 0.6 N3 A:NCO73 2.6 13.7 0.4 N5 A:NCO73 2.8 9.2 0.4 N1 A:NCO73 3.0 13.9 0.4 N4 A:NCO73 3.1 13.7 0.4 OE1 A:GLU41 3.9 23.6 1.0 O A:HOH95 4.3 34.2 1.0 OE2 A:GLU41 4.4 24.1 1.0 CD A:GLU41 4.6 22.3 1.0

Cobalt binding site 4 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Co72 b:15.1 occ:1.00 CO B:NCO72 0.0 15.1 1.0 N2 B:NCO72 2.0 21.5 1.0 N4 B:NCO72 2.0 20.8 1.0 N6 B:NCO72 2.0 18.8 1.0 N5 B:NCO72 2.0 20.7 1.0 N3 B:NCO72 2.0 22.1 1.0 N1 B:NCO72 2.0 17.8 1.0 OG B:SER59 3.8 14.2 1.0 O B:CYS56 3.9 9.8 1.0 O B:GLU54 3.9 16.5 1.0 O B:HOH94 4.2 20.3 1.0 C B:GLU54 4.8 13.8 1.0

Cobalt binding site 5 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Co74 b:12.0 occ:0.50 CO B:NCO74 0.0 12.0 0.5 N3 B:NCO74 1.3 14.6 0.5 CO B:NCO74 1.4 13.2 0.5 N6 B:NCO74 1.6 13.6 0.5 N4 B:NCO74 2.0 17.1 0.5 N2 B:NCO74 2.0 14.8 0.5 N6 B:NCO74 2.0 17.3 0.5 N5 B:NCO74 2.0 14.7 0.5 N3 B:NCO74 2.0 16.7 0.5 N1 B:NCO74 2.0 15.3 0.5 N4 B:NCO74 2.4 14.9 0.5 N2 B:NCO74 2.4 15.3 0.5 N5 B:NCO74 3.1 14.7 0.5 N1 B:NCO74 3.2 17.1 0.5 OE1 B:GLU41 4.0 24.2 1.0 OE2 B:GLU41 4.2 21.1 1.0 CD B:GLU41 4.5 20.6 1.0 O B:HOH132 4.9 26.9 1.0

Cobalt binding site 6 out of 6 in the The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of The 1.5 A Resolution Crystal Structure of [FE3S4]- Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Co74 b:13.2 occ:0.50 CO B:NCO74 0.0 13.2 0.5 CO B:NCO74 1.4 12.0 0.5 N5 B:NCO74 1.4 14.7 0.5 N1 B:NCO74 1.5 15.3 0.5 N1 B:NCO74 2.0 17.1 0.5 N4 B:NCO74 2.0 14.9 0.5 N5 B:NCO74 2.0 14.7 0.5 N2 B:NCO74 2.0 15.3 0.5 N6 B:NCO74 2.0 13.6 0.5 N3 B:NCO74 2.0 14.6 0.5 N2 B:NCO74 2.4 14.8 0.5 N4 B:NCO74 2.5 17.1 0.5 N3 B:NCO74 3.1 16.7 0.5 N6 B:NCO74 3.2 17.3 0.5 OE2 B:GLU41 4.0 21.1 1.0 O B:HOH133 4.4 22.2 0.5 OE1 B:GLU41 4.4 24.2 1.0 CD B:GLU41 4.6 20.6 1.0 O B:HOH116 4.6 38.2 1.0

M.S.Nielsen, P.Harris, B.L.Ooi, H.E.M.Christensen. The 1.5 A Resolution Crystal Structure of [FE3S4]-Ferredoxin From the Hyperthermophilic Archaeon Pyrococcus Furiosus Biochemistry V. 43 5188 2004.
ISSN: ISSN 0006-2960
PubMed: 15122884
DOI: 10.1021/BI049942X