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Cobalt in PDB 1ue2: Crystal Structure of D(GC38GAAAGCT)

Protein crystallography data

The structure of Crystal Structure of D(GC38GAAAGCT), PDB code: 1ue2 was solved by T.Sunami, J.Kondo, I.Hirao, K.Watanaba, K.Miura, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.40
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 36.736, 36.736, 64.754, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 23.6

Other elements in 1ue2:

The structure of Crystal Structure of D(GC38GAAAGCT) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iodine (I) 1 atom
Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of D(GC38GAAAGCT) (pdb code 1ue2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of D(GC38GAAAGCT), PDB code: 1ue2:

Cobalt binding site 1 out of 1 in 1ue2

Go back to Cobalt Binding Sites List in 1ue2
Cobalt binding site 1 out of 1 in the Crystal Structure of D(GC38GAAAGCT)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of D(GC38GAAAGCT) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co766

b:12.5
occ:0.33
CO A:NCO766 0.0 12.5 0.3
N2 A:NCO766 2.0 15.2 1.0
N1 A:NCO766 2.0 15.6 1.0
O A:HOH779 4.1 17.6 1.0
O6 A:DG3 4.1 16.7 1.0
N7 A:DG3 4.3 16.5 1.0
CL A:CL10 4.3 31.7 0.3
C6 A:DG3 4.9 16.6 1.0
C5 A:DG3 5.0 14.8 1.0

Reference:

T.Sunami, J.Kondo, I.Hirao, K.Watanabe, K.I.Miura, A.Takenaka. Structure of D(Gcgaaagc) (Hexagonal Form): A Base-Intercalated Duplex As A Stable Structure. Acta Crystallogr.,Sect.D V. 60 90 2004.
ISSN: ISSN 0907-4449
PubMed: 14684897
DOI: 10.1107/S0907444903024703
Page generated: Tue Jul 30 14:40:15 2024

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