Atomistry » Cobalt » PDB 1rrk-1vlx » 1ugp
Atomistry »
  Cobalt »
    PDB 1rrk-1vlx »
      1ugp »

Cobalt in PDB 1ugp: Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid

Enzymatic activity of Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid

All present enzymatic activity of Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid, PDB code: 1ugp was solved by A.Miyanaga, S.Fushinobu, K.Ito, H.Shoun, T.Wakagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.54 / 1.63
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.564, 65.564, 184.994, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 19.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid (pdb code 1ugp). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid, PDB code: 1ugp:

Cobalt binding site 1 out of 1 in 1ugp

Go back to Cobalt Binding Sites List in 1ugp
Cobalt binding site 1 out of 1 in the Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Co-Type Nitrile Hydratase Complexed with N-Butyric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:7.0
occ:1.00
N A:CSO113 2.0 5.4 1.0
N A:SER112 2.0 6.0 1.0
SG A:CSD111 2.2 7.2 1.0
SG A:CYS108 2.2 7.6 1.0
O1 A:BUA1302 2.2 17.2 0.5
SG A:CSO113 2.3 10.6 1.0
O1 A:BUA1302 2.6 22.6 0.5
C A:SER112 2.8 5.2 1.0
CA A:SER112 2.8 6.7 1.0
CA A:CSO113 2.9 6.9 1.0
OD A:CSO113 3.0 12.0 1.0
OD1 A:CSD111 3.0 8.1 1.0
CB A:CSO113 3.0 11.5 1.0
OD2 A:CSD111 3.0 8.4 1.0
C A:CSD111 3.1 6.4 1.0
CB A:CSD111 3.1 6.6 1.0
C4 A:BUA1302 3.1 25.5 0.5
O2 A:BUA1302 3.3 25.1 0.5
CB A:CYS108 3.3 5.3 1.0
CA A:CSD111 3.5 6.1 1.0
N A:CSD111 3.8 6.1 1.0
OG A:SER112 3.8 13.8 1.0
C4 A:BUA1302 3.8 26.8 0.5
CB A:SER112 3.9 8.9 1.0
O A:SER112 3.9 7.0 1.0
O A:CSD111 4.2 6.3 1.0
C A:CSO113 4.3 6.2 1.0
C3 A:BUA1302 4.5 28.6 0.5
O A:CSO113 4.6 7.7 1.0
O2 A:BUA1302 4.7 28.2 0.5
CA A:CYS108 4.7 4.2 1.0
C3 A:BUA1302 4.7 26.0 0.5
NH2 B:ARG157 4.8 7.2 1.0
C A:LEU110 4.8 6.4 1.0
O A:CYS108 4.9 7.0 1.0

Reference:

A.Miyanaga, S.Fushinobu, K.Ito, H.Shoun, T.Wakagi. Mutational and Structural Analysis of Cobalt-Containing Nitrile Hydratase on Substrate and Metal Binding Eur.J.Biochem. V. 271 429 2004.
ISSN: ISSN 0014-2956
PubMed: 14717710
DOI: 10.1046/J.1432-1033.2003.03943.X
Page generated: Sun Dec 13 10:36:21 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy