Chemical elements
  Cobalt
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    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
      1r8k
      1req
      1rl4
      1rmq
      1rqb
      1rqc
      1rqe
      1rqh
      1rqy
      1rr2
      1rrk
      1rv8
      1rvg
      1rxt
      1rza
      1rzb
      1s23
      1s3h
      1scs
      1siz
      1sj1
      1sjf
      1stg
      1sth
      1t0a
      1t2u
      1t31
      1t5k
      1tqq
      1tu4
      1tum
      1u5j
      1u67
      1u8d
      1u8r
      1ub8
      1uc4
      1uc5
      1ue2
      1ue3
      1ugp
      1ugr
      1ugs
      1ugt
      1uhx
      1uhy
      1ukw
      1uv5
      1v29
      1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Crystal Structure Of AT109S Mutant of Co-Type Nitrile Hydratase (pdb 1ugr)






The binding sites of Cobalt atom in the structure of Crystal Structure Of AT109S Mutant of Co-Type Nitrile Hydratase (pdb code 1ugr). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 1ugr structure was solved by A.MIYANAGA, S.FUSHINOBU, K.ITO, H.SHOUN, T.WAKAGI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)19.4-1.8
Space groupP3221
a (A)65.437
b (A)65.437
c (A)184.257
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)18.9
Rfree (%)21.3


Cobalt Binding Sites:

Cobalt binding site 1 out of 1 in 1ugr


Cobalt binding site 1 out of 1 in 1ugr
Click to enlarge
stereopicture of Cobalt binding site 1 out of 1 in 1ugr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1ugr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys108, A: Leu110, A: Csd111, A: Ser112, A: Cso113, B: Arg157, A: Hoh330,

conact list:


AtomAtomDistance (A)
CoO A:Cys1084.75
CoCB A:Cys1083.43
CoSG A:Cys1082.38
CoCA A:Cys1084.78
CoC A:Leu1104.86
CoO A:Csd1114.20
CoN A:Csd1113.83
CoCB A:Csd1113.10
CoSG A:Csd1112.13
CoOD2 A:Csd1113.01
CoC A:Csd1113.11
CoOD1 A:Csd1112.93
CoCA A:Csd1113.47
CoO A:Ser1123.89
CoN A:Ser1122.07
CoCB A:Ser1123.95
CoOG A:Ser1123.87
CoC A:Ser1122.72
CoCA A:Ser1122.82
CoO A:Cso1134.56
CoN A:Cso1131.92
CoCB A:Cso1133.08
CoSG A:Cso1132.45
CoOD A:Cso1132.96
CoC A:Cso1134.23
CoCA A:Cso1132.93
CoNH2 B:Arg1574.78
CoO A:Hoh3302.51

interactive model:




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