Cobalt in the structure of Crystal Structure of D(Gcgagagc): the Base-Intercalated Duplex (pdb 1uhx)

The binding sites of Cobalt atom in the structure of Crystal Structure of D(Gcgagagc): the Base-Intercalated Duplex (pdb code 1uhx). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1uhx structure was solved by J.KONDO, S.I.UMEDA, K.FUJITA, T.SUNAMI, A.TAKENAKA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-2.0 Space group P6322 a (A) 37.670 b (A) 37.670 c (A) 65.490 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 22 Rfree (%) 27.8 Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 1uhx Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1uhx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Dg3, A: Nco78, A: Hoh12, conact list: Atom Atom Distance (A) Co C6 A:Dg3 4.87 Co C5 A:Dg3 4.98 Co N7 A:Dg3 4.31 Co O6 A:Dg3 4.05 Co N1 A:Nco78 1.95 Co N6 A:Nco78 1.95 Co CO A:Nco78 0.00 Co N3 A:Nco78 1.95 Co N2 A:Nco78 1.95 Co N5 A:Nco78 1.95 Co N4 A:Nco78 1.95 Co O A:Hoh12 4.01 interactive model: