Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
      1vl3
      1vlx
      1vz0
      1w8q
      1wmn
      1wmp
      1wn1
      1wvd
      1x9c
      1xa2
      1xam
      1xcs
      1xcu
      1xeo
      1xgm
      1xgn
      1xgs
      1xim
      1xmh
      1xrc
      1xrs
      1xst
      1xsu
      1xuh
      1y39
      1y6g
      1y6t
      1y6v
      1y7a
      1y80
      1y8z
      1y98
      1ya6
      1ycl
      1ydp
      1yj3
      1yog
      1yoh
      1yoi
      1yvm
      1z3f
      1zft
      1zfv
      1zfx
      1zjc
      1zjg
      1ztz
      1zzb
      1zzc
      212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Design of New Mimochromes With Unique Topology (pdb 1vl3)






The binding sites of Cobalt atom in the structure of Design of New Mimochromes With Unique Topology (pdb code 1vl3). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 1vl3 structure was solved by A.LOMBARDI, F.NASTRI, D.MARASCO, O.MAGLIO, G.DE SANCTIS, F.SINIBALDI, R.SANTUCCI, M.COLETTA, V.PAVONE, with NMR in Solution technique.


Cobalt Binding Sites:

Cobalt binding site 1 out of 1 in 1vl3


Cobalt binding site 1 out of 1 in 1vl3
Click to enlarge
stereopicture of Cobalt binding site 1 out of 1 in 1vl3
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1vl3. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Leu4, A: His5, B: His5, B: Deu19,

conact list:


AtomAtomDistance (A)
CoHB3 A:Leu44.93
CoCD2 A:His53.09
CoCG A:His54.19
CoHD2 A:His53.25
CoNE2 A:His52.05
CoHE1 A:His53.38
CoND1 A:His54.17
CoCE1 A:His53.01
CoCD2 B:His53.05
CoCG B:His54.16
CoHD2 B:His53.20
CoNE2 B:His52.04
CoHE1 B:His53.41
CoND1 B:His54.17
CoCE1 B:His53.01
CoC2D B:Deu194.24
CoNC B:Deu192.07
CoCHB B:Deu193.42
CoCHC B:Deu193.41
CoC3D B:Deu194.24
CoNA B:Deu192.06
CoCHA B:Deu193.39
CoC2A B:Deu194.23
CoC1D B:Deu193.05
CoC4A B:Deu193.05
CoC4B B:Deu193.02
CoC3A B:Deu194.24
CoC4C B:Deu193.05
CoC2B B:Deu194.24
CoHHA B:Deu194.47
CoC1C B:Deu193.07
CoC2C B:Deu194.27
CoHHB B:Deu194.49
CoND B:Deu192.07
CoCHD B:Deu193.42
CoHHD B:Deu194.50
CoC1B B:Deu193.05
CoNB B:Deu192.06
CoHHC B:Deu194.48
CoC3C B:Deu194.23
CoC3B B:Deu194.20
CoCO B:Deu190.00
CoC4D B:Deu193.05
CoC1A B:Deu193.03

interactive model:




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