Cobalt in PDB 1vz0: Chromosome Segregation Protein SPO0J From Thermus Thermophilus

The structure of Chromosome Segregation Protein SPO0J From Thermus Thermophilus, PDB code: 1vz0 was solved by T.A.Leonard, P.J.G.Butler, J.Lowe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.72 / 2.30
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	182.240, 295.150, 73.490, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 27.8

The structure of Chromosome Segregation Protein SPO0J From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Cobalt atom in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus (pdb code 1vz0). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 13 binding sites of Cobalt where determined in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus, PDB code: 1vz0:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cobalt binding site 1 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1209 b:46.0 occ:1.00 N A:GLN37 3.6 33.1 1.0 N A:PRO38 3.6 32.7 1.0 O A:HOH2140 3.7 36.2 1.0 CA A:PRO38 3.9 29.3 1.0 CD A:PRO38 3.9 29.6 1.0 C A:GLN37 3.9 33.9 1.0 CA A:ARG36 4.0 35.6 1.0 C A:ARG36 4.1 36.3 1.0 CB A:PRO38 4.3 29.1 1.0 CB A:ARG36 4.3 37.7 1.0 CA A:GLN37 4.4 35.3 1.0 O A:GLN37 4.4 33.3 1.0 CD2 C:LEU105 4.5 41.2 1.0 CG A:ARG41 4.5 48.5 1.0 CB A:ARG41 4.5 37.5 1.0 NE A:ARG41 4.6 53.4 1.0 O C:HOH2028 4.7 44.5 1.0 CG A:PRO38 4.8 24.2 1.0 O A:PRO35 4.9 35.3 1.0 CG A:ARG36 5.0 38.7 1.0

Cobalt binding site 2 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1210 b:22.1 occ:1.00 N B:GLY176 3.4 23.3 1.0 O B:HOH2099 3.8 36.6 1.0 CB B:ALA175 4.0 19.3 1.0 N B:ALA175 4.0 18.8 1.0 OG1 B:THR174 4.0 16.4 1.0 CB B:THR174 4.1 18.6 1.0 CA B:GLY176 4.1 17.9 1.0 NH2 B:ARG179 4.2 31.1 1.0 C B:ALA175 4.2 24.9 1.0 CA B:ALA175 4.3 20.7 1.0 NH1 B:ARG179 4.4 47.1 1.0 CZ B:ARG179 4.8 37.3 1.0 C B:THR174 4.8 18.6 1.0

Cobalt binding site 3 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1211 b:56.5 occ:1.00 O C:LEU118 3.9 29.0 1.0 O A:HOH2089 4.2 42.2 1.0 O A:GLU116 4.2 33.4 1.0 O C:GLU116 4.2 34.7 1.0 O A:LEU118 4.2 30.9 1.0

Cobalt binding site 4 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Co1215 b:33.5 occ:1.00 O B:HOH2090 2.9 31.4 1.0 O B:HOH2130 2.9 12.2 1.0 NH1 B:ARG170 3.1 46.0 1.0 CD G:ARG80 3.6 35.8 1.0 CB B:GLU166 3.8 16.4 1.0 CB B:GLU163 4.1 25.3 1.0 CA B:GLU163 4.2 23.9 1.0 CG B:GLU166 4.2 28.2 1.0 CG G:ARG80 4.2 36.0 1.0 CD2 G:LEU50 4.3 18.5 1.0 CZ B:ARG170 4.4 46.1 1.0 O B:GLU163 4.5 20.7 1.0 NH1 G:ARG80 4.6 42.7 1.0 CB G:LEU60 4.6 34.1 1.0 CD1 G:LEU50 4.6 16.6 1.0 CB G:ARG80 4.7 28.9 1.0 NE G:ARG80 4.8 38.8 1.0 C B:GLU163 4.8 22.8 1.0 CG G:LEU50 4.9 19.3 1.0

Cobalt binding site 5 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Co1216 b:24.8 occ:1.00 OG B:SER30 3.0 25.3 1.0 N E:GLY176 3.5 22.4 1.0 CB B:SER30 3.7 27.1 1.0 O F:HOH2075 3.9 28.5 1.0 CG B:PRO27 4.0 22.3 1.0 CB E:ALA175 4.1 24.2 1.0 CB E:THR174 4.1 18.9 1.0 N E:ALA175 4.1 19.5 1.0 OG1 E:THR174 4.1 17.2 1.0 CA E:GLY176 4.2 21.6 1.0 CD B:PRO27 4.2 24.5 1.0 NH2 E:ARG179 4.2 37.1 1.0 CE1 G:TYR72 4.3 27.6 1.0 C E:ALA175 4.3 24.2 1.0 CA E:ALA175 4.4 22.9 1.0 NH1 E:ARG179 4.6 48.6 1.0 C E:THR174 4.9 20.4 1.0 CZ E:ARG179 4.9 37.8 1.0 CD1 G:TYR72 4.9 26.1 1.0 CG2 E:THR174 5.0 15.1 1.0

Cobalt binding site 6 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Co1212 b:23.5 occ:1.00 O C:HOH2088 3.1 35.6 1.0 OG D:SER30 3.2 24.5 1.0 N C:GLY176 3.5 18.0 1.0 O C:HOH2086 3.6 27.5 1.0 CB D:SER30 3.7 22.2 1.0 CB C:ALA175 3.9 19.6 1.0 N C:ALA175 3.9 19.1 1.0 CG D:PRO27 3.9 24.6 1.0 CB C:THR174 4.0 20.9 1.0 OG1 C:THR174 4.0 19.2 1.0 CA C:GLY176 4.2 19.2 1.0 CE1 H:TYR72 4.2 15.6 1.0 CD D:PRO27 4.2 27.6 1.0 NH2 C:ARG179 4.2 36.5 1.0 C C:ALA175 4.3 23.5 1.0 CA C:ALA175 4.3 22.3 1.0 NH1 C:ARG179 4.5 48.5 1.0 C C:THR174 4.7 19.4 1.0 CZ C:ARG179 4.9 38.9 1.0 CD1 H:TYR72 4.9 21.8 1.0 CG2 C:THR174 4.9 16.3 1.0 CA C:THR174 5.0 17.2 1.0

Cobalt binding site 7 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Co1213 b:34.4 occ:1.00 O C:HOH2114 2.7 30.8 1.0 O C:HOH2113 3.1 11.4 1.0 O A:HOH2037 3.2 52.3 1.0 NH2 C:ARG170 3.5 28.9 1.0 CD A:ARG80 3.5 36.9 1.0 CB C:GLU166 3.7 22.8 1.0 CG C:GLU166 4.1 30.8 1.0 CB C:GLU163 4.2 26.6 1.0 CG A:ARG80 4.2 34.0 1.0 CA C:GLU163 4.2 24.5 1.0 NH1 C:ARG170 4.2 28.0 1.0 CD2 A:LEU50 4.3 19.3 1.0 CZ C:ARG170 4.3 32.4 1.0 O C:GLU163 4.5 20.4 1.0 CB A:ARG80 4.7 29.8 1.0 NE A:ARG80 4.7 39.1 1.0 CD1 A:LEU50 4.7 22.5 1.0 NH1 A:ARG80 4.8 41.6 1.0 CG A:LEU50 4.8 22.9 1.0 C C:GLU163 4.9 23.9 1.0 CB A:LEU60 5.0 30.8 1.0

Cobalt binding site 8 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ D:Co1215 b:26.6 occ:1.00 O D:HOH2083 2.8 25.1 1.0 O D:HOH2126 2.9 8.6 1.0 O H:HOH2037 3.4 33.2 1.0 NH2 D:ARG170 3.6 27.1 1.0 CD H:ARG80 3.6 28.5 1.0 CB D:GLU166 3.8 22.7 1.0 CB D:GLU163 4.1 24.6 1.0 CA D:GLU163 4.1 20.8 1.0 CG D:GLU166 4.1 29.9 1.0 CD2 H:LEU50 4.2 18.0 1.0 CG H:ARG80 4.3 27.3 1.0 NH1 D:ARG170 4.4 24.0 1.0 CZ D:ARG170 4.4 29.0 1.0 CD1 H:LEU50 4.5 17.3 1.0 O D:GLU163 4.5 19.6 1.0 NH1 H:ARG80 4.7 39.1 1.0 CG H:LEU50 4.7 22.4 1.0 CB H:LEU60 4.7 27.5 1.0 NE H:ARG80 4.8 33.2 1.0 CB H:ARG80 4.8 27.5 1.0 C D:GLU163 4.9 21.9 1.0

Cobalt binding site 9 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 9 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ D:Co1216 b:20.9 occ:1.00 O D:HOH2092 3.0 42.6 1.0 N D:GLY176 3.5 17.0 1.0 CB D:ALA175 4.0 18.5 1.0 N D:ALA175 4.0 19.5 1.0 NH2 D:ARG179 4.1 42.9 1.0 OG1 D:THR174 4.1 14.0 1.0 CA D:GLY176 4.1 16.5 1.0 CB D:THR174 4.1 15.8 1.0 NH1 D:ARG179 4.3 52.8 1.0 C D:ALA175 4.3 23.5 1.0 CA D:ALA175 4.4 20.1 1.0 CZ D:ARG179 4.6 41.5 1.0 O D:HOH2090 4.9 26.6 1.0 C D:THR174 4.9 17.2 1.0

Cobalt binding site 10 out of 13 in the Chromosome Segregation Protein SPO0J From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 10 of Chromosome Segregation Protein SPO0J From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ E:Co1214 b:34.2 occ:1.00 O E:HOH2110 2.8 7.9 1.0 O E:HOH2082 3.2 45.1 1.0 CD F:ARG80 3.7 33.4 1.0 NH2 E:ARG170 3.7 43.8 1.0 NH1 E:ARG170 3.8 44.4 1.0 CB E:GLU166 3.9 16.1 1.0 CB E:GLU163 4.1 25.9 1.0 CZ E:ARG170 4.2 45.0 1.0 CG F:ARG80 4.2 32.6 1.0 CA E:GLU163 4.3 23.9 1.0 CD2 F:LEU50 4.3 15.9 1.0 CG E:GLU166 4.3 25.8 1.0 O E:GLU163 4.5 22.1 1.0 NH1 F:ARG80 4.6 40.9 1.0 CB F:LEU60 4.7 33.1 1.0 CD1 F:LEU50 4.7 15.1 1.0 CB F:ARG80 4.8 28.4 1.0 NE F:ARG80 4.8 35.8 1.0 CG F:LEU50 4.8 19.3 1.0 C E:GLU163 4.9 23.7 1.0

T.A.Leonard, P.J.Butler, J.Lowe. Structural Analysis of the Chromosome Segregation Protein SPO0J From Thermus Thermophilus. Mol. Microbiol. V. 53 419 2004.
ISSN: ISSN 0950-382X
PubMed: 15228524
DOI: 10.1111/J.1365-2958.2004.04133.X