Cobalt in the structure of Chromosome Segregation Protein SPO0J From Thermus Thermophilus (pdb 1vz0)

The binding sites of Cobalt atom in the structure of Chromosome Segregation Protein SPO0J From Thermus Thermophilus (pdb code 1vz0). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 1vz0 structure was solved by T.A.LEONARD, P.J.G.BUTLER, J.LOWE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 38.7-2.3 Space group C222 a (A) 182.240 b (A) 295.150 c (A) 73.490 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 23.5 Rfree (%) 27.8 Cobalt Binding Sites: Cobalt binding site 1 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro35, A: Arg36, A: Gln37, A: Pro38, A: Arg41, C: Leu105, A: Hoh2140, C: Hoh2028, conact list: Atom Atom Distance (A) Co O A:Pro35 4.93 Co CB A:Arg36 4.34 Co C A:Arg36 4.14 Co CG A:Arg36 4.97 Co CA A:Arg36 3.96 Co O A:Gln37 4.43 Co N A:Gln37 3.56 Co C A:Gln37 3.93 Co CA A:Gln37 4.42 Co N A:Pro38 3.58 Co CB A:Pro38 4.32 Co CD A:Pro38 3.93 Co CG A:Pro38 4.82 Co CA A:Pro38 3.87 Co CB A:Arg41 4.54 Co CG A:Arg41 4.50 Co NE A:Arg41 4.57 Co CD2 C:Leu105 4.47 Co O A:Hoh2140 3.70 Co O C:Hoh2028 4.75 interactive model: Cobalt binding site 2 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Thr174, B: Ala175, B: Gly176, B: Arg179, B: Hoh2099, conact list: Atom Atom Distance (A) Co CB B:Thr174 4.07 Co OG1 B:Thr174 4.03 Co C B:Thr174 4.83 Co N B:Ala175 4.03 Co C B:Ala175 4.25 Co CB B:Ala175 4.02 Co CA B:Ala175 4.34 Co N B:Gly176 3.41 Co CA B:Gly176 4.08 Co CZ B:Arg179 4.76 Co NH2 B:Arg179 4.15 Co NH1 B:Arg179 4.43 Co O B:Hoh2099 3.80 interactive model: Cobalt binding site 3 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu116, A: Leu118, C: Glu116, C: Leu118, A: Hoh2089, conact list: Atom Atom Distance (A) Co O A:Glu116 4.17 Co O A:Leu118 4.25 Co O C:Glu116 4.24 Co O C:Leu118 3.93 Co O A:Hoh2089 4.17 interactive model: Cobalt binding site 4 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Glu163, B: Glu166, B: Arg170, G: Leu50, G: Leu60, G: Arg80, B: Hoh2090, B: Hoh2130, conact list: Atom Atom Distance (A) Co O B:Glu163 4.49 Co CB B:Glu163 4.09 Co C B:Glu163 4.84 Co CA B:Glu163 4.15 Co CB B:Glu166 3.85 Co CG B:Glu166 4.19 Co CZ B:Arg170 4.38 Co NH1 B:Arg170 3.10 Co CD1 G:Leu50 4.60 Co CD2 G:Leu50 4.31 Co CG G:Leu50 4.86 Co CB G:Leu60 4.59 Co CB G:Arg80 4.73 Co CD G:Arg80 3.62 Co CG G:Arg80 4.23 Co NE G:Arg80 4.80 Co NH1 G:Arg80 4.58 Co O B:Hoh2090 2.90 Co O B:Hoh2130 2.94 interactive model: Cobalt binding site 5 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Pro27, B: Ser30, E: Thr174, E: Ala175, E: Gly176, E: Arg179, G: Tyr72, F: Hoh2075, conact list: Atom Atom Distance (A) Co CD B:Pro27 4.20 Co CG B:Pro27 4.00 Co CB B:Ser30 3.65 Co OG B:Ser30 2.98 Co CB E:Thr174 4.08 Co CG2 E:Thr174 4.95 Co OG1 E:Thr174 4.13 Co C E:Thr174 4.87 Co N E:Ala175 4.08 Co C E:Ala175 4.35 Co CB E:Ala175 4.08 Co CA E:Ala175 4.41 Co N E:Gly176 3.53 Co CA E:Gly176 4.19 Co CZ E:Arg179 4.88 Co NH2 E:Arg179 4.22 Co NH1 E:Arg179 4.59 Co CD1 G:Tyr72 4.89 Co CE1 G:Tyr72 4.27 Co O F:Hoh2075 3.91 interactive model: Cobalt binding site 6 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Thr174, C: Ala175, C: Gly176, C: Arg179, D: Pro27, D: Ser30, H: Tyr72, C: Hoh2086, C: Hoh2088, conact list: Atom Atom Distance (A) Co CB C:Thr174 3.99 Co CG2 C:Thr174 4.92 Co OG1 C:Thr174 4.04 Co C C:Thr174 4.75 Co CA C:Thr174 4.98 Co N C:Ala175 3.92 Co C C:Ala175 4.28 Co CB C:Ala175 3.90 Co CA C:Ala175 4.28 Co N C:Gly176 3.48 Co CA C:Gly176 4.17 Co CZ C:Arg179 4.86 Co NH2 C:Arg179 4.24 Co NH1 C:Arg179 4.53 Co CD D:Pro27 4.18 Co CG D:Pro27 3.94 Co CB D:Ser30 3.69 Co OG D:Ser30 3.19 Co CD1 H:Tyr72 4.92 Co CE1 H:Tyr72 4.18 Co O C:Hoh2086 3.58 Co O C:Hoh2088 3.12 interactive model: Cobalt binding site 7 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Leu50, A: Leu60, A: Arg80, C: Glu163, C: Glu166, C: Arg170, A: Hoh2037, C: Hoh2113, C: Hoh2114, conact list: Atom Atom Distance (A) Co CD1 A:Leu50 4.71 Co CD2 A:Leu50 4.28 Co CG A:Leu50 4.80 Co CB A:Leu60 4.97 Co CB A:Arg80 4.69 Co CD A:Arg80 3.54 Co CG A:Arg80 4.16 Co NE A:Arg80 4.71 Co NH1 A:Arg80 4.76 Co O C:Glu163 4.50 Co CB C:Glu163 4.15 Co C C:Glu163 4.87 Co CA C:Glu163 4.18 Co CB C:Glu166 3.73 Co CG C:Glu166 4.09 Co CZ C:Arg170 4.32 Co NH2 C:Arg170 3.47 Co NH1 C:Arg170 4.24 Co O A:Hoh2037 3.16 Co O C:Hoh2113 3.06 Co O C:Hoh2114 2.69 interactive model: Cobalt binding site 8 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Glu163, D: Glu166, D: Arg170, H: Leu50, H: Leu60, H: Arg80, D: Hoh2083, D: Hoh2126, H: Hoh2037, conact list: Atom Atom Distance (A) Co O D:Glu163 4.54 Co CB D:Glu163 4.06 Co C D:Glu163 4.87 Co CA D:Glu163 4.14 Co CB D:Glu166 3.79 Co CG D:Glu166 4.15 Co CZ D:Arg170 4.40 Co NH2 D:Arg170 3.56 Co NH1 D:Arg170 4.36 Co CD1 H:Leu50 4.53 Co CD2 H:Leu50 4.24 Co CG H:Leu50 4.72 Co CB H:Leu60 4.75 Co CB H:Arg80 4.81 Co CD H:Arg80 3.64 Co CG H:Arg80 4.30 Co NE H:Arg80 4.79 Co NH1 H:Arg80 4.71 Co O D:Hoh2083 2.79 Co O D:Hoh2126 2.89 Co O H:Hoh2037 3.41 interactive model: Cobalt binding site 9 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Thr174, D: Ala175, D: Gly176, D: Arg179, D: Hoh2090, D: Hoh2092, conact list: Atom Atom Distance (A) Co CB D:Thr174 4.13 Co OG1 D:Thr174 4.12 Co C D:Thr174 4.88 Co N D:Ala175 4.04 Co C D:Ala175 4.29 Co CB D:Ala175 4.02 Co CA D:Ala175 4.36 Co N D:Gly176 3.47 Co CA D:Gly176 4.12 Co CZ D:Arg179 4.62 Co NH2 D:Arg179 4.07 Co NH1 D:Arg179 4.26 Co O D:Hoh2090 4.87 Co O D:Hoh2092 2.95 interactive model: Cobalt binding site 10 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Glu163, E: Glu166, E: Arg170, F: Leu50, F: Leu60, F: Arg80, E: Hoh2082, E: Hoh2110, conact list: Atom Atom Distance (A) Co O E:Glu163 4.49 Co CB E:Glu163 4.14 Co C E:Glu163 4.90 Co CA E:Glu163 4.26 Co CB E:Glu166 3.92 Co CG E:Glu166 4.34 Co CZ E:Arg170 4.21 Co NH2 E:Arg170 3.73 Co NH1 E:Arg170 3.77 Co CD1 F:Leu50 4.71 Co CD2 F:Leu50 4.29 Co CG F:Leu50 4.85 Co CB F:Leu60 4.66 Co CB F:Arg80 4.78 Co CD F:Arg80 3.65 Co CG F:Arg80 4.24 Co NE F:Arg80 4.82 Co NH1 F:Arg80 4.58 Co O E:Hoh2082 3.18 Co O E:Hoh2110 2.85 interactive model: Cobalt binding site 11 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Glu116, E: Leu118, F: Glu116, F: Leu118, E: Hoh2058, conact list: Atom Atom Distance (A) Co O E:Glu116 3.96 Co C E:Glu116 4.94 Co O E:Leu118 3.85 Co C E:Leu118 4.98 Co O F:Glu116 4.20 Co O F:Leu118 4.01 Co O E:Hoh2058 4.79 interactive model: Cobalt binding site 12 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Glu116, B: Leu118, G: Glu116, G: Leu118, conact list: Atom Atom Distance (A) Co O B:Glu116 4.06 Co O B:Leu118 3.90 Co C B:Leu118 4.90 Co O G:Glu116 4.10 Co C G:Glu116 4.98 Co O G:Leu118 4.12 interactive model: Cobalt binding site 13 out of 13 in 1vz0 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cobalt in the PDB 1vz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Glu116, D: Leu118, H: Glu116, H: Leu118, H: Hoh2086, conact list: Atom Atom Distance (A) Co O D:Glu116 4.16 Co O D:Leu118 3.90 Co C D:Leu118 4.99 Co O H:Glu116 4.09 Co O H:Leu118 4.18 Co O H:Hoh2086 4.17 interactive model: