Cobalt in PDB 1y39: Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain

The structure of Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain, PDB code: 1y39 was solved by M.S.Dunstan, D.Guhathakurta, D.E.Draper, G.L.Conn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.00 / 2.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	150.240, 150.240, 62.984, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 25.3

The structure of Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain also contains other interesting chemical elements:

Magnesium	(Mg)	18 atoms
Potassium	(K)	2 atoms

The binding sites of Cobalt atom in the Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain (pdb code 1y39). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain, PDB code: 1y39:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Co402 b:99.7 occ:1.00 OP1 C:G137 3.7 69.3 1.0 O4 C:U131 3.9 61.8 1.0 O4 C:U133 4.1 75.0 1.0 OP2 C:A136 4.2 69.3 1.0 O4 C:U132 4.3 69.7 1.0 C4 C:U131 4.7 63.0 1.0 OP1 C:A136 4.8 70.9 1.0 P C:A136 4.8 70.5 1.0 C4 C:U133 4.8 74.1 1.0 O5' C:A136 4.9 71.0 1.0 C5 C:U131 4.9 62.9 1.0

Cobalt binding site 2 out of 2 in the Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Co-Evolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Co401 b:76.4 occ:1.00 OP1 D:G337 3.7 53.8 1.0 O4 D:U331 4.1 51.1 1.0 OP1 D:A336 4.2 57.2 1.0 O4 D:U332 4.2 53.9 1.0 OP2 D:A336 4.2 54.8 1.0 OP1 C:U116 4.4 61.0 1.0 O4 D:U333 4.5 61.5 1.0 OP2 C:A117 4.5 51.6 1.0 P D:A336 4.5 56.3 1.0 OP2 C:U116 4.6 60.0 1.0 O5' D:A336 4.7 56.0 1.0 C4 D:U331 4.8 51.6 1.0 P C:U116 4.9 61.2 1.0 C5 D:U331 5.0 51.3 1.0

M.S.Dunstan, D.Guhathakurta, D.E.Draper, G.L.Conn. Coevolution of Protein and Rna Structures Within A Highly Conserved Ribosomal Domain Chem.Biol. V. 12 201 2005.
ISSN: ISSN 1074-5521
PubMed: 15734647
DOI: 10.1016/J.CHEMBIOL.2004.11.019