Atomistry » Cobalt » PDB 1vz0-1zft » 1zft
Atomistry »
  Cobalt »
    PDB 1vz0-1zft »
      1zft »

Cobalt in PDB 1zft: The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site

Protein crystallography data

The structure of The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site, PDB code: 1zft was solved by J.E.Wedekind, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.46 / 2.33
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.400, 93.400, 131.500, 90.00, 90.00, 120.00
R / Rfree (%) 22.7 / 24.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site (pdb code 1zft). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site, PDB code: 1zft:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 1zft

Go back to Cobalt Binding Sites List in 1zft
Cobalt binding site 1 out of 2 in the The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co102

b:77.3
occ:1.00
CO B:NCO102 0.0 77.3 1.0
N4 B:NCO102 2.0 76.7 1.0
N5 B:NCO102 2.0 77.6 1.0
N3 B:NCO102 2.0 77.8 1.0
N2 B:NCO102 2.0 77.9 1.0
N6 B:NCO102 2.0 77.8 1.0
N1 B:NCO102 2.0 76.8 1.0
O6 B:G12 3.9 46.2 1.0
O6 B:G13 4.0 47.6 1.0
N7 B:G12 4.4 52.0 1.0
O3 A:SO4103 4.5 65.2 0.5
C6 B:G12 4.7 47.1 1.0
C5 B:G12 4.9 49.3 1.0
O2 A:SO4103 4.9 65.0 0.5
N7 B:G13 5.0 48.7 1.0

Cobalt binding site 2 out of 2 in 1zft

Go back to Cobalt Binding Sites List in 1zft
Cobalt binding site 2 out of 2 in the The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Crystal Structure of An All-Rna Minimal Hairpin Ribozyme with Mutant G8I at the Cleavage Site within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Co101

b:30.2
occ:1.00
CO D:NCO101 0.0 30.2 1.0
N5 D:NCO101 1.9 46.8 1.0
N4 D:NCO101 1.9 46.8 1.0
N3 D:NCO101 2.0 48.7 1.0
N2 D:NCO101 2.0 45.5 1.0
N6 D:NCO101 2.0 45.9 1.0
N1 D:NCO101 2.0 44.2 1.0
OP1 D:A40 3.6 69.9 1.0
OP2 D:U41 3.8 60.9 1.0
OP2 C:A20 3.9 74.3 1.0
O6 C:G21 4.1 62.4 1.0
N7 C:G21 4.4 55.8 1.0
P D:A40 4.6 73.1 1.0
OP2 D:A40 4.8 71.9 1.0
C6 C:G21 4.9 57.4 1.0

Reference:

J.Salter, J.Krucinska, S.Alam, V.Grum-Tokars, J.E.Wedekind. Water in the Active Site of An All-Rna Hairpin Ribozyme and Effects of GUA8 Base Variants on the Geometry of Phosphoryl Transfer. Biochemistry V. 45 686 2006.
ISSN: ISSN 0006-2960
PubMed: 16411744
DOI: 10.1021/BI051887K
Page generated: Sun Dec 13 10:36:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy