Cobalt in PDB 212d: Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna

The structure of Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna, PDB code: 212d was solved by Y.-G.Gao, H.Robinson, J.H.Van Boom, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.90
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	39.092, 39.092, 77.550, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The binding sites of Cobalt atom in the Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna (pdb code 212d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna, PDB code: 212d:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Co11 b:47.7 occ:0.50 CO A:NCO11 0.0 47.7 0.5 N1 A:NCO11 1.9 50.0 0.5 N6 A:NCO11 1.9 48.3 0.5 N4 A:NCO11 2.0 47.6 0.5 N2 A:NCO11 2.0 49.4 0.5 N5 A:NCO11 2.0 49.3 0.5 N3 A:NCO11 2.0 49.6 0.5

Cobalt binding site 2 out of 3 in the Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Co12 b:49.0 occ:0.50 CO A:NCO12 0.0 49.0 0.5 N6 A:NCO12 1.9 48.8 0.5 N2 A:NCO12 2.0 49.2 0.5 N3 A:NCO12 2.0 48.1 0.5 N4 A:NCO12 2.0 49.8 0.5 N1 A:NCO12 2.0 49.1 0.5 N5 A:NCO12 2.0 47.7 0.5 O A:HOH67 3.7 29.3 1.0

Cobalt binding site 3 out of 3 in the Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Co13 b:43.2 occ:0.50 CO A:NCO13 0.0 43.2 0.5 N6 A:NCO13 1.9 48.9 0.5 N2 A:NCO13 1.9 50.2 0.5 N1 A:NCO13 1.9 48.4 0.5 N5 A:NCO13 2.0 49.2 0.5 N3 A:NCO13 2.0 50.7 0.5 N4 A:NCO13 2.0 48.0 0.5 O A:HOH66 3.6 30.1 1.0 O A:HOH53 4.2 42.5 1.0 O A:HOH34 4.6 37.6 1.0

Y.G.Gao, H.Robinson, J.H.Van Boom, A.H.Wang. Influence of Counter-Ions on the Crystal Structures of Dna Decamers: Binding of [Co(NH3)6]3+ and BA2+ to A-Dna. Biophys.J. V. 69 559 1995.
ISSN: ISSN 0006-3495
PubMed: 8527670