Cobalt in PDB 232d: The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct)

The structure of The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct), PDB code: 232d was solved by C.M.Nunn, S.Neidle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.30
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	32.700, 32.700, 78.700, 90.00, 90.00, 120.00
R / Rfree (%)	13.9 / 21.6

The binding sites of Cobalt atom in the The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct) (pdb code 232d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct), PDB code: 232d:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co11 b:26.7 occ:1.00 CO A:NCO11 0.0 26.7 1.0 N4 A:NCO11 1.9 27.0 1.0 N5 A:NCO11 1.9 28.3 1.0 N6 A:NCO11 1.9 29.1 1.0 N3 A:NCO11 1.9 29.3 1.0 N2 A:NCO11 1.9 27.8 1.0 N1 A:NCO11 2.0 30.3 1.0 O A:HOH19 3.8 25.2 1.0 O A:HOH51 3.9 35.8 1.0 O A:HOH24 4.1 29.8 1.0 O A:HOH25 4.3 28.2 1.0 O A:HOH66 4.5 45.7 1.0 O A:HOH80 4.8 44.6 1.0 O A:HOH27 4.9 55.4 1.0

Cobalt binding site 2 out of 2 in the The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co12 b:29.6 occ:1.00 CO A:NCO12 0.0 29.6 1.0 N1 A:NCO12 1.9 32.3 1.0 N2 A:NCO12 1.9 30.5 1.0 N4 A:NCO12 1.9 31.3 1.0 N5 A:NCO12 1.9 39.3 1.0 N6 A:NCO12 2.0 31.4 1.0 N3 A:NCO12 2.0 36.0 1.0 O A:HOH49 3.9 51.0 1.0 O A:HOH46 3.9 50.4 1.0 OP1 A:DG3 3.9 20.0 1.0 O A:HOH58 4.4 53.8 1.0 O A:HOH42 4.4 37.9 1.0

C.M.Nunn, S.Neidle. The High Resolution Crystal Structure of the Dna Decamer D(Aggcatgcct). J.Mol.Biol. V. 256 340 1996.
ISSN: ISSN 0022-2836
PubMed: 8594201
DOI: 10.1006/JMBI.1996.0090