Cobalt in PDB 2bo7: Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Protein crystallography data
The structure of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase, PDB code: 2bo7
was solved by
J.Flint,
E.Taylor,
M.Yang,
D.N.Bolam,
L.E.Tailford,
C.Martinez-Fleites,
E.J.Dodson,
B.G.Davis,
H.J.Gilbert,
G.J.Davies,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
223.61 /
2.95
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
406.699,
162.140,
108.431,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.7 /
22.4
|
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
(pdb code 2bo7). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 10 binding sites of Cobalt where determined in the
Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase, PDB code: 2bo7:
Jump to Cobalt binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Cobalt binding site 1 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 1 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co1384
b:67.0
occ:1.00
|
O3B
|
A:GDP1383
|
1.7
|
66.1
|
1.0
|
ND1
|
A:HIS217
|
2.0
|
66.1
|
1.0
|
OD2
|
A:ASP102
|
2.0
|
64.2
|
1.0
|
O1A
|
A:GDP1383
|
2.0
|
63.9
|
1.0
|
CE1
|
A:HIS217
|
2.8
|
65.3
|
1.0
|
CG
|
A:ASP102
|
2.8
|
63.4
|
1.0
|
OD1
|
A:ASP102
|
2.8
|
63.8
|
1.0
|
PB
|
A:GDP1383
|
3.0
|
66.6
|
1.0
|
CG
|
A:HIS217
|
3.2
|
64.3
|
1.0
|
PA
|
A:GDP1383
|
3.3
|
63.4
|
1.0
|
O3A
|
A:GDP1383
|
3.5
|
63.4
|
1.0
|
CB
|
A:HIS217
|
3.7
|
63.5
|
1.0
|
O2B
|
A:GDP1383
|
3.9
|
64.9
|
1.0
|
NE2
|
A:HIS217
|
4.0
|
66.0
|
1.0
|
O1B
|
A:GDP1383
|
4.1
|
64.3
|
1.0
|
CB
|
A:ASP102
|
4.2
|
62.7
|
1.0
|
CD2
|
A:HIS217
|
4.2
|
64.5
|
1.0
|
O
|
A:ARG218
|
4.2
|
64.4
|
1.0
|
OD2
|
A:ASP100
|
4.3
|
65.6
|
1.0
|
O2A
|
A:GDP1383
|
4.3
|
64.3
|
1.0
|
O5'
|
A:GDP1383
|
4.4
|
63.9
|
1.0
|
O
|
A:HOH2024
|
4.5
|
41.3
|
1.0
|
N
|
A:ARG218
|
4.5
|
64.4
|
1.0
|
C5'
|
A:GDP1383
|
4.5
|
63.8
|
1.0
|
O
|
A:HOH2009
|
4.7
|
41.9
|
1.0
|
NH2
|
A:ARG218
|
4.7
|
63.7
|
1.0
|
CA
|
A:HIS217
|
5.0
|
63.7
|
1.0
|
|
Cobalt binding site 2 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 2 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Co1384
b:67.5
occ:1.00
|
O3B
|
B:GDP1383
|
1.8
|
66.0
|
1.0
|
OD2
|
B:ASP102
|
2.0
|
64.2
|
1.0
|
O1A
|
B:GDP1383
|
2.0
|
64.1
|
1.0
|
ND1
|
B:HIS217
|
2.0
|
66.3
|
1.0
|
CG
|
B:ASP102
|
2.7
|
63.5
|
1.0
|
OD1
|
B:ASP102
|
2.7
|
63.9
|
1.0
|
CE1
|
B:HIS217
|
2.8
|
65.4
|
1.0
|
PB
|
B:GDP1383
|
3.1
|
66.4
|
1.0
|
CG
|
B:HIS217
|
3.2
|
64.5
|
1.0
|
PA
|
B:GDP1383
|
3.2
|
63.2
|
1.0
|
O3A
|
B:GDP1383
|
3.5
|
63.5
|
1.0
|
CB
|
B:HIS217
|
3.6
|
63.4
|
1.0
|
O2B
|
B:GDP1383
|
3.8
|
64.9
|
1.0
|
NE2
|
B:HIS217
|
4.0
|
66.1
|
1.0
|
OD2
|
B:ASP100
|
4.2
|
65.9
|
1.0
|
CB
|
B:ASP102
|
4.2
|
62.6
|
1.0
|
CD2
|
B:HIS217
|
4.2
|
64.7
|
1.0
|
O1B
|
B:GDP1383
|
4.2
|
64.3
|
1.0
|
O2A
|
B:GDP1383
|
4.2
|
64.6
|
1.0
|
O
|
B:ARG218
|
4.3
|
64.6
|
1.0
|
O5'
|
B:GDP1383
|
4.3
|
63.7
|
1.0
|
C5'
|
B:GDP1383
|
4.5
|
63.9
|
1.0
|
N
|
B:ARG218
|
4.5
|
64.2
|
1.0
|
NH2
|
B:ARG218
|
4.7
|
63.5
|
1.0
|
CA
|
B:HIS217
|
5.0
|
63.7
|
1.0
|
CG
|
B:ASP100
|
5.0
|
65.1
|
1.0
|
CE
|
B:LYS215
|
5.0
|
64.5
|
1.0
|
|
Cobalt binding site 3 out
of 10 in 2bo7
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Cobalt Binding Sites List in 2bo7
Cobalt binding site 3 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Co1384
b:67.7
occ:1.00
|
OD2
|
C:ASP102
|
1.9
|
64.5
|
1.0
|
O3B
|
C:GDP1383
|
1.9
|
66.0
|
1.0
|
O1A
|
C:GDP1383
|
2.0
|
63.6
|
1.0
|
ND1
|
C:HIS217
|
2.0
|
66.2
|
1.0
|
CG
|
C:ASP102
|
2.6
|
63.5
|
1.0
|
OD1
|
C:ASP102
|
2.7
|
63.7
|
1.0
|
CE1
|
C:HIS217
|
2.9
|
65.5
|
1.0
|
CG
|
C:HIS217
|
3.1
|
64.5
|
1.0
|
PB
|
C:GDP1383
|
3.2
|
66.3
|
1.0
|
PA
|
C:GDP1383
|
3.2
|
63.3
|
1.0
|
CB
|
C:HIS217
|
3.6
|
63.4
|
1.0
|
O3A
|
C:GDP1383
|
3.6
|
63.6
|
1.0
|
O2B
|
C:GDP1383
|
3.9
|
64.5
|
1.0
|
CB
|
C:ASP102
|
4.1
|
62.5
|
1.0
|
NE2
|
C:HIS217
|
4.1
|
66.0
|
1.0
|
CD2
|
C:HIS217
|
4.2
|
64.7
|
1.0
|
O2A
|
C:GDP1383
|
4.2
|
64.5
|
1.0
|
O
|
C:ARG218
|
4.2
|
64.8
|
1.0
|
O1B
|
C:GDP1383
|
4.3
|
64.5
|
1.0
|
OD2
|
C:ASP100
|
4.3
|
65.5
|
1.0
|
O5'
|
C:GDP1383
|
4.4
|
63.7
|
1.0
|
N
|
C:ARG218
|
4.5
|
64.3
|
1.0
|
C5'
|
C:GDP1383
|
4.5
|
63.9
|
1.0
|
NH2
|
C:ARG218
|
4.7
|
63.8
|
1.0
|
CA
|
C:HIS217
|
4.9
|
63.8
|
1.0
|
C
|
C:HIS217
|
5.0
|
64.0
|
1.0
|
|
Cobalt binding site 4 out
of 10 in 2bo7
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Cobalt Binding Sites List in 2bo7
Cobalt binding site 4 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Co1384
b:68.6
occ:1.00
|
O3B
|
D:GDP1383
|
1.9
|
65.9
|
1.0
|
O1A
|
D:GDP1383
|
2.0
|
63.9
|
1.0
|
ND1
|
D:HIS217
|
2.0
|
66.3
|
1.0
|
OD2
|
D:ASP102
|
2.0
|
64.4
|
1.0
|
CE1
|
D:HIS217
|
2.8
|
65.6
|
1.0
|
CG
|
D:ASP102
|
2.9
|
63.4
|
1.0
|
OD1
|
D:ASP102
|
2.9
|
63.5
|
1.0
|
PB
|
D:GDP1383
|
3.1
|
66.4
|
1.0
|
CG
|
D:HIS217
|
3.2
|
64.5
|
1.0
|
PA
|
D:GDP1383
|
3.2
|
63.2
|
1.0
|
O3A
|
D:GDP1383
|
3.5
|
63.7
|
1.0
|
O2B
|
D:GDP1383
|
3.7
|
64.7
|
1.0
|
CB
|
D:HIS217
|
3.8
|
63.5
|
1.0
|
NE2
|
D:HIS217
|
4.0
|
65.9
|
1.0
|
O
|
D:ARG218
|
4.1
|
64.8
|
1.0
|
O2A
|
D:GDP1383
|
4.1
|
64.3
|
1.0
|
CD2
|
D:HIS217
|
4.2
|
64.8
|
1.0
|
CB
|
D:ASP102
|
4.2
|
62.6
|
1.0
|
O1B
|
D:GDP1383
|
4.3
|
64.1
|
1.0
|
O5'
|
D:GDP1383
|
4.4
|
63.6
|
1.0
|
OD2
|
D:ASP100
|
4.4
|
65.7
|
1.0
|
N
|
D:ARG218
|
4.5
|
64.2
|
1.0
|
NH2
|
D:ARG218
|
4.6
|
63.8
|
1.0
|
C5'
|
D:GDP1383
|
4.6
|
63.9
|
1.0
|
CA
|
D:HIS217
|
5.0
|
63.7
|
1.0
|
|
Cobalt binding site 5 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 5 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Co1384
b:67.0
occ:1.00
|
O3B
|
E:GDP1383
|
1.8
|
66.2
|
1.0
|
ND1
|
E:HIS217
|
2.0
|
66.2
|
1.0
|
OD2
|
E:ASP102
|
2.1
|
64.3
|
1.0
|
O1A
|
E:GDP1383
|
2.1
|
63.8
|
1.0
|
OD1
|
E:ASP102
|
2.7
|
63.8
|
1.0
|
CG
|
E:ASP102
|
2.7
|
63.6
|
1.0
|
CE1
|
E:HIS217
|
2.8
|
65.5
|
1.0
|
CG
|
E:HIS217
|
3.1
|
64.4
|
1.0
|
PB
|
E:GDP1383
|
3.2
|
66.0
|
1.0
|
PA
|
E:GDP1383
|
3.3
|
63.0
|
1.0
|
CB
|
E:HIS217
|
3.6
|
63.5
|
1.0
|
O3A
|
E:GDP1383
|
3.6
|
63.5
|
1.0
|
O2B
|
E:GDP1383
|
3.9
|
64.5
|
1.0
|
NE2
|
E:HIS217
|
4.0
|
66.0
|
1.0
|
CB
|
E:ASP102
|
4.2
|
62.5
|
1.0
|
CD2
|
E:HIS217
|
4.2
|
64.7
|
1.0
|
OD2
|
E:ASP100
|
4.2
|
65.7
|
1.0
|
O1B
|
E:GDP1383
|
4.3
|
64.1
|
1.0
|
O2A
|
E:GDP1383
|
4.3
|
64.0
|
1.0
|
O
|
E:ARG218
|
4.3
|
64.5
|
1.0
|
O5'
|
E:GDP1383
|
4.4
|
63.5
|
1.0
|
N
|
E:ARG218
|
4.5
|
64.2
|
1.0
|
C5'
|
E:GDP1383
|
4.5
|
63.8
|
1.0
|
NH2
|
E:ARG218
|
4.7
|
63.7
|
1.0
|
CE
|
E:LYS215
|
4.9
|
64.5
|
1.0
|
CA
|
E:HIS217
|
4.9
|
63.8
|
1.0
|
|
Cobalt binding site 6 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 6 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Co1384
b:67.0
occ:1.00
|
O3B
|
F:GDP1383
|
1.8
|
65.7
|
1.0
|
OD2
|
F:ASP102
|
1.9
|
64.1
|
1.0
|
ND1
|
F:HIS217
|
2.1
|
66.1
|
1.0
|
O1A
|
F:GDP1383
|
2.1
|
63.9
|
1.0
|
OD1
|
F:ASP102
|
2.6
|
63.7
|
1.0
|
CG
|
F:ASP102
|
2.6
|
63.5
|
1.0
|
CE1
|
F:HIS217
|
2.9
|
65.3
|
1.0
|
PB
|
F:GDP1383
|
3.1
|
65.8
|
1.0
|
CG
|
F:HIS217
|
3.2
|
64.5
|
1.0
|
PA
|
F:GDP1383
|
3.3
|
63.4
|
1.0
|
CB
|
F:HIS217
|
3.6
|
63.5
|
1.0
|
O3A
|
F:GDP1383
|
3.6
|
63.6
|
1.0
|
O2B
|
F:GDP1383
|
3.9
|
64.4
|
1.0
|
CB
|
F:ASP102
|
4.1
|
62.8
|
1.0
|
NE2
|
F:HIS217
|
4.1
|
65.8
|
1.0
|
OD2
|
F:ASP100
|
4.1
|
65.5
|
1.0
|
O1B
|
F:GDP1383
|
4.2
|
64.1
|
1.0
|
CD2
|
F:HIS217
|
4.2
|
64.6
|
1.0
|
O2A
|
F:GDP1383
|
4.3
|
64.1
|
1.0
|
O5'
|
F:GDP1383
|
4.4
|
63.7
|
1.0
|
O
|
F:ARG218
|
4.4
|
64.5
|
1.0
|
C5'
|
F:GDP1383
|
4.5
|
63.8
|
1.0
|
N
|
F:ARG218
|
4.6
|
64.2
|
1.0
|
NH2
|
F:ARG218
|
4.7
|
63.7
|
1.0
|
CE
|
F:LYS215
|
4.8
|
64.3
|
1.0
|
CG
|
F:ASP100
|
4.8
|
64.8
|
1.0
|
CB
|
F:ASP100
|
4.8
|
63.4
|
1.0
|
NZ
|
F:LYS215
|
4.9
|
64.9
|
1.0
|
CA
|
F:HIS217
|
4.9
|
63.8
|
1.0
|
|
Cobalt binding site 7 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 7 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 7 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Co1384
b:66.9
occ:1.00
|
OD2
|
G:ASP102
|
1.9
|
64.2
|
1.0
|
ND1
|
G:HIS217
|
1.9
|
66.2
|
1.0
|
O3B
|
G:GDP1383
|
1.9
|
65.8
|
1.0
|
O1A
|
G:GDP1383
|
2.1
|
64.2
|
1.0
|
CE1
|
G:HIS217
|
2.7
|
65.5
|
1.0
|
CG
|
G:ASP102
|
2.7
|
63.5
|
1.0
|
OD1
|
G:ASP102
|
2.8
|
63.7
|
1.0
|
CG
|
G:HIS217
|
3.1
|
64.5
|
1.0
|
PB
|
G:GDP1383
|
3.2
|
65.9
|
1.0
|
PA
|
G:GDP1383
|
3.4
|
63.5
|
1.0
|
CB
|
G:HIS217
|
3.6
|
63.6
|
1.0
|
O3A
|
G:GDP1383
|
3.7
|
63.7
|
1.0
|
O2B
|
G:GDP1383
|
3.8
|
64.4
|
1.0
|
NE2
|
G:HIS217
|
3.9
|
66.0
|
1.0
|
O
|
G:ARG218
|
4.1
|
64.7
|
1.0
|
CD2
|
G:HIS217
|
4.1
|
64.6
|
1.0
|
CB
|
G:ASP102
|
4.1
|
62.8
|
1.0
|
O2A
|
G:GDP1383
|
4.2
|
64.2
|
1.0
|
O1B
|
G:GDP1383
|
4.3
|
64.1
|
1.0
|
N
|
G:ARG218
|
4.4
|
64.2
|
1.0
|
OD2
|
G:ASP100
|
4.4
|
65.4
|
1.0
|
O5'
|
G:GDP1383
|
4.5
|
63.7
|
1.0
|
NH2
|
G:ARG218
|
4.6
|
63.9
|
1.0
|
C5'
|
G:GDP1383
|
4.7
|
63.8
|
1.0
|
CA
|
G:HIS217
|
4.9
|
63.8
|
1.0
|
C
|
G:HIS217
|
4.9
|
64.0
|
1.0
|
C
|
G:ARG218
|
5.0
|
64.6
|
1.0
|
|
Cobalt binding site 8 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 8 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 8 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Co1384
b:67.7
occ:1.00
|
O3B
|
H:GDP1383
|
1.9
|
65.8
|
1.0
|
ND1
|
H:HIS217
|
2.0
|
66.2
|
1.0
|
OD2
|
H:ASP102
|
2.0
|
64.2
|
1.0
|
O1A
|
H:GDP1383
|
2.1
|
63.9
|
1.0
|
CE1
|
H:HIS217
|
2.7
|
65.4
|
1.0
|
CG
|
H:ASP102
|
2.9
|
63.4
|
1.0
|
OD1
|
H:ASP102
|
3.0
|
63.5
|
1.0
|
PB
|
H:GDP1383
|
3.1
|
65.9
|
1.0
|
CG
|
H:HIS217
|
3.2
|
64.4
|
1.0
|
PA
|
H:GDP1383
|
3.2
|
63.3
|
1.0
|
O3A
|
H:GDP1383
|
3.5
|
63.6
|
1.0
|
O2B
|
H:GDP1383
|
3.7
|
64.6
|
1.0
|
CB
|
H:HIS217
|
3.7
|
63.6
|
1.0
|
NE2
|
H:HIS217
|
3.9
|
65.8
|
1.0
|
O
|
H:ARG218
|
4.0
|
64.5
|
1.0
|
CD2
|
H:HIS217
|
4.1
|
64.6
|
1.0
|
O2A
|
H:GDP1383
|
4.1
|
64.2
|
1.0
|
CB
|
H:ASP102
|
4.2
|
62.7
|
1.0
|
O1B
|
H:GDP1383
|
4.3
|
64.1
|
1.0
|
N
|
H:ARG218
|
4.4
|
64.3
|
1.0
|
O5'
|
H:GDP1383
|
4.5
|
63.9
|
1.0
|
NH2
|
H:ARG218
|
4.5
|
63.7
|
1.0
|
OD2
|
H:ASP100
|
4.6
|
65.3
|
1.0
|
C5'
|
H:GDP1383
|
4.7
|
63.8
|
1.0
|
CA
|
H:HIS217
|
5.0
|
63.8
|
1.0
|
C
|
H:HIS217
|
5.0
|
64.1
|
1.0
|
C
|
H:ARG218
|
5.0
|
64.5
|
1.0
|
|
Cobalt binding site 9 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 9 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 9 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Co1384
b:67.4
occ:1.00
|
O3B
|
I:GDP1383
|
1.7
|
66.1
|
1.0
|
ND1
|
I:HIS217
|
2.0
|
66.4
|
1.0
|
OD2
|
I:ASP102
|
2.1
|
64.2
|
1.0
|
O1A
|
I:GDP1383
|
2.1
|
64.2
|
1.0
|
CE1
|
I:HIS217
|
2.7
|
65.4
|
1.0
|
CG
|
I:ASP102
|
2.9
|
63.4
|
1.0
|
PB
|
I:GDP1383
|
2.9
|
66.3
|
1.0
|
OD1
|
I:ASP102
|
3.0
|
63.6
|
1.0
|
PA
|
I:GDP1383
|
3.3
|
63.5
|
1.0
|
CG
|
I:HIS217
|
3.3
|
64.5
|
1.0
|
O3A
|
I:GDP1383
|
3.5
|
63.7
|
1.0
|
O2B
|
I:GDP1383
|
3.6
|
64.6
|
1.0
|
O
|
I:HOH2008
|
3.6
|
56.2
|
1.0
|
CB
|
I:HIS217
|
3.8
|
63.5
|
1.0
|
NE2
|
I:HIS217
|
4.0
|
65.8
|
1.0
|
O1B
|
I:GDP1383
|
4.1
|
64.1
|
1.0
|
O2A
|
I:GDP1383
|
4.2
|
64.1
|
1.0
|
CD2
|
I:HIS217
|
4.2
|
64.6
|
1.0
|
O
|
I:ARG218
|
4.2
|
64.4
|
1.0
|
CB
|
I:ASP102
|
4.3
|
62.7
|
1.0
|
OD2
|
I:ASP100
|
4.4
|
65.7
|
1.0
|
O5'
|
I:GDP1383
|
4.4
|
63.7
|
1.0
|
C5'
|
I:GDP1383
|
4.6
|
63.8
|
1.0
|
NH2
|
I:ARG218
|
4.7
|
63.7
|
1.0
|
N
|
I:ARG218
|
4.7
|
64.3
|
1.0
|
|
Cobalt binding site 10 out
of 10 in 2bo7
Go back to
Cobalt Binding Sites List in 2bo7
Cobalt binding site 10 out
of 10 in the Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 10 of Dissection of Mannosylglycerate Synthase: An Archetypal Mannosyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Co1384
b:67.7
occ:1.00
|
OD2
|
J:ASP102
|
1.8
|
64.3
|
1.0
|
ND1
|
J:HIS217
|
1.9
|
66.2
|
1.0
|
O1A
|
J:GDP1383
|
2.1
|
63.9
|
1.0
|
O3B
|
J:GDP1383
|
2.1
|
66.0
|
1.0
|
CG
|
J:ASP102
|
2.7
|
63.5
|
1.0
|
CE1
|
J:HIS217
|
2.7
|
65.5
|
1.0
|
OD1
|
J:ASP102
|
3.0
|
63.6
|
1.0
|
CG
|
J:HIS217
|
3.1
|
64.5
|
1.0
|
PB
|
J:GDP1383
|
3.3
|
66.2
|
1.0
|
PA
|
J:GDP1383
|
3.3
|
63.3
|
1.0
|
CB
|
J:HIS217
|
3.6
|
63.5
|
1.0
|
O3A
|
J:GDP1383
|
3.6
|
63.6
|
1.0
|
O2B
|
J:GDP1383
|
3.8
|
64.6
|
1.0
|
O
|
J:ARG218
|
3.9
|
64.7
|
1.0
|
NE2
|
J:HIS217
|
3.9
|
65.9
|
1.0
|
CB
|
J:ASP102
|
4.1
|
62.8
|
1.0
|
CD2
|
J:HIS217
|
4.1
|
64.7
|
1.0
|
O2A
|
J:GDP1383
|
4.1
|
64.3
|
1.0
|
N
|
J:ARG218
|
4.3
|
64.2
|
1.0
|
O1B
|
J:GDP1383
|
4.5
|
64.2
|
1.0
|
NH2
|
J:ARG218
|
4.5
|
63.7
|
1.0
|
O5'
|
J:GDP1383
|
4.5
|
63.8
|
1.0
|
OD2
|
J:ASP100
|
4.7
|
65.7
|
1.0
|
C5'
|
J:GDP1383
|
4.8
|
63.9
|
1.0
|
C
|
J:ARG218
|
4.8
|
64.6
|
1.0
|
CA
|
J:HIS217
|
4.8
|
63.8
|
1.0
|
C
|
J:HIS217
|
4.9
|
64.1
|
1.0
|
CA
|
J:ARG218
|
4.9
|
64.2
|
1.0
|
CB
|
J:ARG218
|
4.9
|
64.0
|
1.0
|
CZ
|
J:ARG218
|
5.0
|
64.1
|
1.0
|
|
Reference:
J.Flint,
E.Taylor,
M.Yang,
D.N.Bolam,
L.E.Tailford,
C.Martinez-Fleites,
E.J.Dodson,
B.G.Davis,
H.J.Gilbert,
G.J.Davies.
Structural Dissection and High-Throughput Screening of Mannosylglycerate Synthase. Nat. Struct. Mol. Biol. V. 12 608 2005.
ISSN: ISSN 1545-9993
PubMed: 15951819
DOI: 10.1038/NSMB950
Page generated: Tue Jul 30 14:58:18 2024
|