Cobalt in PDB 2cf4: Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell

The structure of Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell, PDB code: 2cf4 was solved by F.M.D.Vellieux, G.Schoehn, M.A.Dura, A.Roussel, B.Franzetti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.91 / 3.08
Space group	F 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	221.880, 221.880, 221.880, 90.00, 90.00, 90.00
R / Rfree (%)	25.6 / 33.2

The binding sites of Cobalt atom in the Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell (pdb code 2cf4). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell, PDB code: 2cf4:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:61.6 occ:1.00 NE2 A:HIS306 2.2 48.9 1.0 OE1 A:GLU205 2.3 51.0 1.0 OD2 A:ASP172 2.3 48.4 1.0 CD A:GLU205 2.8 50.9 1.0 OE2 A:GLU205 2.8 51.0 1.0 CE1 A:HIS306 3.1 49.0 1.0 CD2 A:HIS306 3.1 48.9 1.0 CG A:ASP172 3.2 48.4 1.0 CO A:CO402 3.5 61.4 1.0 CB A:ASP172 3.9 48.0 1.0 OD1 A:ASP172 4.1 48.5 1.0 ND1 A:HIS306 4.1 48.9 1.0 CG A:HIS306 4.2 48.8 1.0 CG A:GLU205 4.2 50.8 1.0 OD1 A:ASP227 4.4 49.1 1.0 CD1 A:LEU305 4.5 46.1 1.0 OE1 A:GLU204 4.6 50.6 1.0 NE2 A:HIS61 4.8 57.6 1.0 OD2 A:ASP227 4.9 49.3 1.0 OE2 A:GLU204 4.9 50.5 1.0

Cobalt binding site 2 out of 2 in the Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Pyrococcus Horikoshii TET1 Peptidase Can Assemble Into A Tetrahedron or A Large Octahedral Shell within 5.0Å range: probe atom residue distance (Å) B Occ A:Co402 b:61.4 occ:1.00 NE2 A:HIS61 1.9 57.6 1.0 OD2 A:ASP227 2.0 49.3 1.0 OD1 A:ASP172 2.3 48.5 1.0 CE1 A:HIS61 2.6 57.6 1.0 CG A:ASP172 2.7 48.4 1.0 CG A:ASP227 2.8 49.2 1.0 OD1 A:ASP227 2.9 49.1 1.0 OD2 A:ASP172 3.1 48.4 1.0 CD2 A:HIS61 3.1 57.7 1.0 CO A:CO401 3.5 61.6 1.0 CB A:ASP173 3.5 44.8 1.0 CB A:ASP172 3.5 48.0 1.0 OE2 A:GLU204 3.8 50.5 1.0 ND1 A:HIS61 3.8 57.7 1.0 C A:ASP172 3.9 46.9 1.0 CA A:ASP172 3.9 47.5 1.0 OE2 A:GLU205 3.9 51.0 1.0 N A:ASP173 3.9 45.9 1.0 OE1 A:GLU204 3.9 50.6 1.0 CA A:ASP173 4.0 45.2 1.0 CD A:GLU204 4.1 50.5 1.0 CG A:HIS61 4.1 57.8 1.0 CD A:GLU205 4.2 50.9 1.0 CB A:ASP227 4.2 49.1 1.0 CG A:ASP173 4.3 44.5 1.0 O A:ASP172 4.4 47.2 1.0 OE1 A:GLU205 4.5 51.0 1.0 N A:SER228 4.7 47.3 1.0 OD2 A:ASP173 4.8 44.4 1.0 CA A:ASP227 4.8 48.7 1.0 OG A:SER228 4.8 46.7 1.0 CG A:GLU205 4.8 50.8 1.0 OD1 A:ASP173 4.9 44.3 1.0

G.Schoehn, F.M.D.Vellieux, M.A.Dura, V.Receveur-Brechot, C.M.S.Fabry, R.W.H.Ruigrok, C.Ebel, A.Roussel, B.Franzetti. An Archaeal Peptidase Assembles Into Two Different Quaternary Structures: A Tetrahedron and A Giant Octahedron. J.Biol.Chem. V. 281 36327 2006.
ISSN: ISSN 0021-9258
PubMed: 16973604
DOI: 10.1074/JBC.M604417200