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Cobalt in PDB 2djl: Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate

Enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate

All present enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate:
1.3.3.1;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate, PDB code: 2djl was solved by D.K.Inaoka, H.Shimizu, K.Sakamoto, T.Shiba, G.Kurisu, T.Nara, T.Aoki, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.154, 71.766, 123.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 18.3

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate (pdb code 2djl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate, PDB code: 2djl:

Cobalt binding site 1 out of 1 in 2djl

Go back to Cobalt Binding Sites List in 2djl
Cobalt binding site 1 out of 1 in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1351

b:9.6
occ:1.00
CO A:NCO1351 0.0 9.6 1.0
N6 A:NCO1351 2.0 10.2 1.0
N5 A:NCO1351 2.0 9.5 1.0
N4 A:NCO1351 2.0 10.3 1.0
N2 A:NCO1351 2.0 10.1 1.0
N3 A:NCO1351 2.0 10.4 1.0
N1 A:NCO1351 2.0 9.8 1.0
O A:GLN275 3.8 8.2 1.0
O A:HOH1655 3.9 16.5 1.0
O A:GLU276 4.1 9.0 1.0
O A:HOH1561 4.1 17.1 1.0
O A:HOH1567 4.2 21.6 1.0
O A:HOH1595 4.2 31.1 1.0
O A:HOH1657 4.2 22.8 1.0
O A:HOH1403 4.3 12.6 1.0
C A:GLU276 4.8 8.4 1.0
C A:GLN275 5.0 7.7 1.0

Reference:

D.K.Inaoka, H.Shimizu, K.Sakamoto, T.Shiba, G.Kurisu, T.Nara, T.Aoki, S.Harada, K.Kita. Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Succinate To Be Published.
Page generated: Sun Jul 13 18:08:03 2025

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