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Cobalt in PDB 2dpp: Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase

Enzymatic activity of Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase

All present enzymatic activity of Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase, PDB code: 2dpp was solved by T.L.Tsekoa, A.O.Tastan-Bishop, R.A.Cameron, B.T.Sewell, M.F.Sayed, D.A.Cowan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.52
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.620, 106.620, 83.230, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 27.9

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase (pdb code 2dpp). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase, PDB code: 2dpp:

Cobalt binding site 1 out of 1 in 2dpp

Go back to Cobalt Binding Sites List in 2dpp
Cobalt binding site 1 out of 1 in the Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:26.9
occ:1.00
N A:CSO121 2.0 21.7 1.0
N A:SER120 2.0 21.1 1.0
SG A:CSO121 2.1 20.9 1.0
SG A:CSD119 2.3 17.4 1.0
SG A:CYS116 2.3 19.5 1.0
C A:SER120 2.9 22.2 1.0
CA A:SER120 3.0 22.0 1.0
CA A:CSO121 3.0 21.0 1.0
CB A:CSO121 3.0 21.1 1.0
C A:CSD119 3.1 18.5 1.0
OD1 A:CSD119 3.2 22.2 1.0
CB A:CSD119 3.2 15.6 1.0
OD2 A:CSD119 3.3 19.0 1.0
CB A:CYS116 3.3 17.6 1.0
OD A:CSO121 3.4 27.0 1.0
CA A:CSD119 3.5 18.4 1.0
OG A:SER120 3.8 23.6 1.0
N A:CSD119 3.8 17.3 1.0
CB A:SER120 4.0 22.8 1.0
O A:SER120 4.1 23.2 1.0
O A:CSD119 4.2 18.6 1.0
C A:CSO121 4.3 21.8 1.0
CA A:CYS116 4.7 18.2 1.0
O A:CSO121 4.8 19.4 1.0
NH2 B:ARG160 4.8 15.0 1.0
C A:LEU118 4.9 18.6 1.0

Reference:

T.L.Tsekoa, A.O.Tastan-Bishop, R.A.Cameron, B.T.Sewell, M.F.Sayed, D.A.Cowan. Crystal Structure of Thermostable Bacillus Sp. RAPC8 Nitrile Hydratse To Be Published.
Page generated: Sun Jul 13 18:08:03 2025

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