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Cobalt in PDB 2e6a: Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate

Enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate

All present enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate:
1.3.3.1;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate, PDB code: 2e6a was solved by D.K.Inaoka, H.Shimizu, K.Sakamoto, T.Shiba, G.Kurisu, T.Nara, T.Aoki, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.51 / 1.64
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.248, 71.881, 123.574, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate (pdb code 2e6a). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate, PDB code: 2e6a:

Cobalt binding site 1 out of 1 in 2e6a

Go back to Cobalt Binding Sites List in 2e6a
Cobalt binding site 1 out of 1 in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1351

b:9.4
occ:1.00
CO A:NCO1351 0.0 9.4 1.0
N3 A:NCO1351 2.0 12.3 1.0
N1 A:NCO1351 2.0 11.8 1.0
N2 A:NCO1351 2.0 11.5 1.0
N5 A:NCO1351 2.0 11.6 1.0
N6 A:NCO1351 2.0 11.6 1.0
N4 A:NCO1351 2.0 11.8 1.0
O A:GLN275 3.9 7.3 1.0
O A:GLU276 4.2 8.4 1.0
O A:HOH1428 4.4 17.2 1.0
C A:GLU276 4.9 7.9 1.0

Reference:

D.K.Inaoka, H.Shimizu, K.Sakamoto, T.Shiba, G.Kurisu, T.Nara, T.Aoki, S.Harada, K.Kita. Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Orotate To Be Published.
Page generated: Sun Dec 13 10:37:35 2020

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