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Cobalt in PDB 2e6d: Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate

Enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate

All present enzymatic activity of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate:
1.3.3.1;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate, PDB code: 2e6d was solved by D.K.Inaoka, H.Shimizu, K.Sakamoto, T.Shiba, G.Kurisu, T.Nara, T.Aoki, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.88 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.282, 71.880, 123.612, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 20

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate (pdb code 2e6d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate, PDB code: 2e6d:

Cobalt binding site 1 out of 1 in 2e6d

Go back to Cobalt Binding Sites List in 2e6d
Cobalt binding site 1 out of 1 in the Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Fumarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1351

b:6.7
occ:1.00
CO A:NCO1351 0.0 6.7 1.0
N1 A:NCO1351 2.0 5.8 1.0
N3 A:NCO1351 2.0 6.6 1.0
N6 A:NCO1351 2.0 7.4 1.0
N4 A:NCO1351 2.0 7.5 1.0
N5 A:NCO1351 2.0 8.0 1.0
N2 A:NCO1351 2.0 7.5 1.0
O A:GLN275 3.8 5.7 1.0
O A:GLU276 4.2 6.5 1.0
O A:HOH1537 4.4 8.4 1.0
C A:GLU276 4.9 6.0 1.0

Reference:

D.K.Inaoka, K.Sakamoto, H.Shimizu, T.Shiba, G.Kurisu, T.Nara, T.Aoki, K.Kita, S.Harada. Structures of Trypanosoma Cruzi Dihydroorotate Dehydrogenase Complexed with Substrates and Products: Atomic Resolution Insights Into Mechanisms of Dihydroorotate Oxidation and Fumarate Reduction Biochemistry V. 47 10881 2008.
ISSN: ISSN 0006-2960
PubMed: 18808149
DOI: 10.1021/BI800413R
Page generated: Sun Jul 13 18:09:06 2025

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