Cobalt in PDB 2eff: Crystal Structure Analysis of the Complex Between Cyay and Co(II)

The structure of Crystal Structure Analysis of the Complex Between Cyay and Co(II), PDB code: 2eff was solved by F.Sica, M.Franzese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.60 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	43.828, 43.828, 98.596, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 22.8

The binding sites of Cobalt atom in the Crystal Structure Analysis of the Complex Between Cyay and Co(II) (pdb code 2eff). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure Analysis of the Complex Between Cyay and Co(II), PDB code: 2eff:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure Analysis of the Complex Between Cyay and Co(II)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure Analysis of the Complex Between Cyay and Co(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:28.4 occ:0.61 O A:HOH562 1.8 57.2 1.0 O A:HOH635 1.9 48.8 1.0 OE2 A:GLU33 2.1 35.3 1.0 O A:HOH553 2.3 34.2 1.0 O A:HOH517 2.3 22.1 1.0 O A:HOH637 2.9 62.1 1.0 CD A:GLU33 3.0 33.5 1.0 O A:HOH636 3.0 60.6 1.0 OE1 A:GLU33 3.1 24.8 1.0 O A:HOH520 3.3 36.0 1.0 CG A:GLU33 4.4 19.9 1.0 O A:HOH605 4.4 30.6 1.0 O A:CYS32 4.4 21.6 1.0 O A:HOH554 4.4 22.3 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure Analysis of the Complex Between Cyay and Co(II)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure Analysis of the Complex Between Cyay and Co(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co502 b:22.6 occ:0.54 O A:HOH526 2.1 35.3 1.0 OD1 A:ASP3 2.1 31.5 1.0 O A:HOH539 2.1 31.4 1.0 O A:HOH543 2.2 42.5 1.0 NE2 A:HIS58 2.2 31.5 1.0 O A:HOH530 2.3 51.4 1.0 CE1 A:HIS58 2.7 46.2 1.0 CG A:ASP3 3.1 29.9 1.0 CD2 A:HIS58 3.4 26.4 1.0 OD2 A:ASP3 3.5 32.5 1.0 ND1 A:HIS58 3.9 39.9 1.0 O A:HOH522 4.0 55.6 1.0 O A:PRO56 4.1 30.6 1.0 O A:GLU55 4.2 24.2 1.0 CG A:HIS58 4.3 22.9 1.0 CB A:ASP3 4.5 19.7 1.0 CA A:ASP3 4.7 19.9 1.0 N A:ASP3 4.7 20.6 1.0 C A:PRO56 4.8 36.4 1.0 O A:HOH577 5.0 43.1 1.0

C.Pastore, M.Franzese, F.Sica, P.Temussi, A.Pastore. Understanding the Binding Properties of An Unusual Metal-Binding Protein - A Study of Bacterial Frataxin Febs J. V. 274 4199 2007.
ISSN: ISSN 1742-464X
PubMed: 17651435
DOI: 10.1111/J.1742-4658.2007.05946.X