Cobalt in PDB 2ehd: Crystal Structure Analysis of Oxidoreductase

The structure of Crystal Structure Analysis of Oxidoreductase, PDB code: 2ehd was solved by N.Kamiya, T.Hikima, A.Ebihara, Y.Inoue, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.40
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	104.020, 104.020, 105.930, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 25.5

The binding sites of Cobalt atom in the Crystal Structure Analysis of Oxidoreductase (pdb code 2ehd). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure Analysis of Oxidoreductase, PDB code: 2ehd:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure Analysis of Oxidoreductase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure Analysis of Oxidoreductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1001 b:61.8 occ:1.00 OG A:SER14 3.0 42.6 1.0 O A:HOH1016 3.3 40.7 1.0 CA A:GLY12 3.6 31.1 1.0 CB A:ALA36 3.9 37.4 1.0 C A:GLY12 4.0 32.2 1.0 CB A:SER14 4.0 39.5 1.0 NE A:ARG15 4.1 62.3 1.0 N A:ARG37 4.1 43.6 1.0 N A:SER14 4.2 35.4 1.0 CA A:ALA36 4.3 39.6 1.0 CZ A:ARG15 4.3 65.6 1.0 NH2 A:ARG15 4.3 66.9 1.0 O A:GLY12 4.3 34.4 1.0 CG A:ARG15 4.4 54.2 1.0 N A:ALA13 4.5 30.6 1.0 N A:ASP38 4.6 46.8 1.0 CA A:SER14 4.6 39.4 1.0 N A:GLY12 4.6 32.5 1.0 CD A:ARG15 4.7 58.7 1.0 C A:ALA36 4.7 41.1 1.0 CB A:ASP38 4.8 47.9 1.0 N A:ARG15 4.8 44.2 1.0 O A:HOH1007 5.0 31.2 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure Analysis of Oxidoreductase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure Analysis of Oxidoreductase within 5.0Å range: probe atom residue distance (Å) B Occ B:Co1002 b:68.0 occ:1.00 N B:ASP38 3.5 48.3 1.0 N B:ARG37 3.6 38.1 1.0 OG B:SER14 3.6 41.8 1.0 CB B:ASP38 3.9 52.9 1.0 CB B:ARG37 4.0 42.6 1.0 CB B:ALA36 4.1 33.4 1.0 CA B:ARG37 4.2 43.5 1.0 C B:ARG37 4.3 45.8 1.0 CA B:ASP38 4.4 51.2 1.0 C B:ALA36 4.6 35.5 1.0 CA B:ALA36 4.7 33.4 1.0 CB B:SER14 4.7 40.4 1.0 CG B:ARG37 4.8 45.7 1.0 NE B:ARG15 4.8 56.1 1.0

N.Kamiya, T.Hikima, A.Ebihara, Y.Inoue. Crystal Structure Analysis of Putative Oxidoreductase From Thermus Thermophilus HB8 To Be Published.