Cobalt in the structure of Crystal Structure of Vascular Apoptosis-Inducing Protein- 1(Orthorhombic Crystal Form) (pdb 2ero)

The binding sites of Cobalt atom in the structure of Crystal Structure of Vascular Apoptosis-Inducing Protein- 1(Orthorhombic Crystal Form) (pdb code 2ero). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 2ero structure was solved by S.TAKEDA, T.IGARASHI, S.ARAKI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-2.5 Space group P212121 a (A) 86.710 b (A) 93.270 c (A) 137.740 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21.2 Rfree (%) 25.8 Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 2ero Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 2ero. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys198, A: His238, A: His243, A: Tyr409, A: Glu445, A: Hoh712, A: Hoh739, A: Hoh765, conact list: Atom Atom Distance (A) Co CE A:Lys198 4.01 Co NZ A:Lys198 4.83 Co NE2 A:His238 2.18 Co ND1 A:His238 4.22 Co CD2 A:His238 3.17 Co CE1 A:His238 3.11 Co CG A:His238 4.29 Co NE2 A:His243 2.16 Co ND1 A:His243 4.11 Co CD2 A:His243 3.31 Co CE1 A:His243 2.91 Co CG A:His243 4.33 Co O A:Tyr409 4.99 Co OE1 A:Glu445 4.67 Co OE2 A:Glu445 4.02 Co CD A:Glu445 4.79 Co O A:Hoh712 2.28 Co O A:Hoh739 4.77 Co O A:Hoh765 4.25 interactive model: