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Cobalt in PDB 2f7v: Structure of Acetylcitrulline Deacetylase Complexed with One Co

Enzymatic activity of Structure of Acetylcitrulline Deacetylase Complexed with One Co

All present enzymatic activity of Structure of Acetylcitrulline Deacetylase Complexed with One Co:
3.5.1.16;

Protein crystallography data

The structure of Structure of Acetylcitrulline Deacetylase Complexed with One Co, PDB code: 2f7v was solved by D.Shi, X.Yu, L.Roth, N.M.Allewell, M.Tuchman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.33 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 94.068, 95.429, 43.670, 90.00, 93.77, 90.00
R / Rfree (%) 19.7 / 22.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Acetylcitrulline Deacetylase Complexed with One Co (pdb code 2f7v). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Acetylcitrulline Deacetylase Complexed with One Co, PDB code: 2f7v:

Cobalt binding site 1 out of 1 in 2f7v

Go back to Cobalt Binding Sites List in 2f7v
Cobalt binding site 1 out of 1 in the Structure of Acetylcitrulline Deacetylase Complexed with One Co


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Acetylcitrulline Deacetylase Complexed with One Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co5367

b:58.0
occ:1.00
OD1 A:ASP103 2.0 23.2 1.0
OE2 A:GLU155 2.2 22.2 1.0
NE2 A:HIS72 2.2 19.2 1.0
O A:HOH5461 2.3 38.5 1.0
OE1 A:GLU155 2.6 20.2 1.0
CD A:GLU155 2.7 21.1 1.0
CG A:ASP103 2.8 23.2 1.0
OD2 A:ASP103 2.9 27.5 1.0
CE1 A:HIS72 3.1 18.6 1.0
CD2 A:HIS72 3.2 19.5 1.0
OE1 A:GLU130 3.5 22.9 1.0
OE2 A:GLU131 3.8 25.1 1.0
O A:HOH5711 4.0 47.8 1.0
CD A:GLU130 4.1 23.1 1.0
CB A:ASP103 4.2 21.6 1.0
CG A:GLU155 4.2 17.4 1.0
ND1 A:HIS72 4.2 17.4 1.0
CD A:GLU131 4.3 22.9 1.0
CG A:HIS72 4.3 17.8 1.0
CB A:ILE104 4.5 16.5 1.0
OE1 A:GLU131 4.5 21.6 1.0
OE2 A:GLU130 4.5 26.9 1.0
CG2 A:ILE104 4.5 17.1 1.0
CA A:ASP103 4.7 19.5 1.0
C A:ASP103 4.7 19.0 1.0
O A:ALA154 4.8 16.4 1.0
CD A:PRO156 4.9 17.5 1.0
CB A:GLU155 4.9 17.2 1.0
CA A:GLU155 4.9 16.5 1.0
CG A:GLU130 5.0 19.2 1.0
O A:ASP103 5.0 20.2 1.0

Reference:

D.Shi, X.Yu, L.Roth, M.Tuchman, N.M.Allewell. Structure of A Novel N-Acetyl-L-Citrulline Deacetylase From Xanthomonas Campestris Biophys.Chem. V. 126 86 2007.
ISSN: ISSN 0301-4622
PubMed: 16750290
DOI: 10.1016/J.BPC.2006.05.013
Page generated: Sun Dec 13 10:37:47 2020

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