Cobalt in the structure of Crystal Structure of Alkb in Complex With Co(II), 2-Oxoglutarate, and Methylated Trinucleotide T-Mea-T (pdb 2fdf)

The binding sites of Cobalt atom in the structure of Crystal Structure of Alkb in Complex With Co(II), 2-Oxoglutarate, and Methylated Trinucleotide T-Mea-T (pdb code 2fdf). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom. The 2fdf structure was solved by B.YU, J.BENACH, W.C.EDSTROM, B.R.GIBNEY, J.F.HUNT, NORTHEAST STRUCTURALGENOMICS CONSORTIUM (NESG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 19.5-2.1 Space group P43 a (A) 41.294 b (A) 41.294 c (A) 116.797 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.3 Rfree (%) 23.7 Cobalt Binding Sites: Cobalt binding site 1 out of 1 in 2fdf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 2fdf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Ma7502, A: His131, A: Asp133, A: Trp178, A: His187, A: Arg210, A: Akg400, A: Hoh697, conact list: Atom Atom Distance (A) Co C2 B:Ma7502 4.49 Co C6 B:Ma7502 4.73 Co CN B:Ma7502 4.37 Co N1 B:Ma7502 4.32 Co NE2 A:His131 2.05 Co ND1 A:His131 4.04 Co CD2 A:His131 3.07 Co CE1 A:His131 2.93 Co CG A:His131 4.14 Co N A:Asp133 4.96 Co CB A:Asp133 4.50 Co OD2 A:Asp133 3.34 Co OD1 A:Asp133 2.28 Co CG A:Asp133 3.13 Co CA A:Asp133 4.99 Co CZ2 A:Trp178 4.59 Co NE2 A:His187 2.11 Co ND1 A:His187 4.20 Co CD2 A:His187 2.99 Co CE1 A:His187 3.15 Co CG A:His187 4.16 Co NH2 A:Arg210 4.12 Co O5 A:Akg400 2.27 Co O2 A:Akg400 2.16 Co C4 A:Akg400 4.93 Co C1 A:Akg400 2.93 Co O1 A:Akg400 4.09 Co C3 A:Akg400 4.41 Co C2 A:Akg400 2.95 Co O A:Hoh697 2.73 interactive model: