Chemical elements
  Cobalt
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    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
      2ehd
      2ero
      2erp
      2evo
      2ew5
      2ew6
      2ew7
      2f0a
      2f1q
      2f7n
      2f7v
      2fdf
      2fgp
      2fij
      2fil
      2fqn
      2fqo
      2fqt
      2fua
      2g5k
      2g6f
      2g6p
      2g9c
      2gg0
      2gg2
      2gg3
      2gg5
      2gg7
      2gg8
      2gg9
      2ggb
      2ggc
      2gli
      2gru
      2gsk
      2gun
      2gve
      2gz5
      2h9a
      2h9f
      2hbx
      2hn1
      2hp5
      2i2x
      2i7e
      2i7s
      2icv
      2ing
      2j2z
      2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Crystal Structure of A Minimal, All Rna Hairpin Ribozyme With Modifications (G8DAP, U39C) At pH 8.6 (pdb 2fgp)






The binding sites of Cobalt atom in the structure of Crystal Structure of A Minimal, All Rna Hairpin Ribozyme With Modifications (G8DAP, U39C) At pH 8.6 (pdb code 2fgp). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 2fgp structure was solved by J.D.SALTER, J.E.WEDEKIND, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.4-2.4
Space groupP6122
a (A)93.770
b (A)93.770
c (A)127.610
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)24.8
Rfree (%)25.9


Cobalt Binding Sites:

Cobalt binding site 1 out of 1 in 2fgp


Cobalt binding site 1 out of 1 in 2fgp
Click to enlarge
stereopicture of Cobalt binding site 1 out of 1 in 2fgp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 2fgp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: A20, C: G21, D: A40, D: U41, C: Nco11,

conact list:


AtomAtomDistance (A)
CoOP2 C:A203.81
CoN7 C:G214.40
CoO6 C:G214.20
CoOP1 D:A403.66
CoP D:A404.73
CoOP2 D:A404.93
CoOP2 D:U413.94
CoN1 C:Nco112.03
CoN6 C:Nco112.02
CoCO C:Nco110.00
CoN3 C:Nco111.97
CoN2 C:Nco112.00
CoN5 C:Nco111.96
CoN4 C:Nco111.96

interactive model:




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