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Cobalt in PDB 2g6f: Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2

Protein crystallography data

The structure of Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2, PDB code: 2g6f was solved by A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.17 / 0.92
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.377, 31.427, 28.171, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 19.9

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2 (pdb code 2g6f). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2, PDB code: 2g6f:

Cobalt binding site 1 out of 1 in 2g6f

Go back to Cobalt Binding Sites List in 2g6f
Cobalt binding site 1 out of 1 in the Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2 within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Co200

b:8.6
occ:0.50
CO X:NCO200 0.0 8.6 0.5
N3 X:NCO200 2.0 9.2 0.5
N4 X:NCO200 2.0 7.4 0.2
N1 X:NCO200 2.0 8.8 0.5
N6 X:NCO200 2.0 7.8 0.2
N2 X:NCO200 2.0 8.2 0.2
N5 X:NCO200 2.0 8.8 0.2
HN32 X:NCO200 2.5 9.2 0.5
HN11 X:NCO200 2.5 8.8 0.5
HN33 X:NCO200 2.5 9.2 0.5
HN12 X:NCO200 2.5 8.8 0.5
HN62 X:NCO200 2.5 8.0 0.2
HN21 X:NCO200 2.5 2.0 0.0
HN22 X:NCO200 2.5 2.0 0.0
HN13 X:NCO200 2.5 8.8 0.5
HN41 X:NCO200 2.5 2.0 0.0
HN23 X:NCO200 2.5 2.0 0.0
HN63 X:NCO200 2.5 7.9 0.2
HN43 X:NCO200 2.5 2.0 0.0
HN42 X:NCO200 2.5 2.0 0.0
HN61 X:NCO200 2.5 7.9 0.2
HN31 X:NCO200 2.5 9.1 0.5
HN52 X:NCO200 2.5 2.0 0.0
HN53 X:NCO200 2.5 2.0 0.0
HN51 X:NCO200 2.5 2.0 0.0
O X:LYS29 3.8 8.5 1.0
OD1 X:ASP31 4.2 9.0 1.0
HB2 X:SER28 4.7 7.4 1.0
HA3 X:GLY30 4.7 8.0 1.0
HB3 X:SER28 4.8 7.2 1.0

Reference:

A.Hoelz, J.M.Janz, S.D.Lawrie, B.Corwin, A.Lee, T.P.Sakmar. Crystal Structure of the SH3 Domain of Betapix in Complex with A High Affinity Peptide From PAK2 J.Mol.Biol. V. 358 509 2006.
ISSN: ISSN 0022-2836
PubMed: 16527308
DOI: 10.1016/J.JMB.2006.02.027
Page generated: Sun Jul 13 18:14:42 2025

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