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Cobalt in PDB 2gli: Five-Finger Gli/Dna Complex

Protein crystallography data

The structure of Five-Finger Gli/Dna Complex, PDB code: 2gli was solved by N.P.Pavletich, C.O.Pabo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 149.000, 50.200, 45.400, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Five-Finger Gli/Dna Complex (pdb code 2gli). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 5 binding sites of Cobalt where determined in the Five-Finger Gli/Dna Complex, PDB code: 2gli:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5;

Cobalt binding site 1 out of 5 in 2gli

Go back to Cobalt Binding Sites List in 2gli
Cobalt binding site 1 out of 5 in the Five-Finger Gli/Dna Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Five-Finger Gli/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co258

b:34.3
occ:1.00
 NE2 A:HIS129 2.0 28.6 1.0
NE2 A:HIS124 2.1 35.8 1.0
SG A:CYS111 2.1 28.5 1.0
SG A:CYS106 2.3 31.2 1.0
CE1 A:HIS129 2.5 28.1 1.0
CE1 A:HIS124 2.9 37.2 1.0
CB A:CYS111 2.9 28.1 1.0
CD2 A:HIS124 3.2 35.4 1.0
CB A:CYS106 3.2 28.6 1.0
CD2 A:HIS129 3.3 29.0 1.0
ND1 A:HIS129 3.8 28.9 1.0
CB A:TRP108 4.0 26.4 1.0
ND1 A:HIS124 4.1 36.7 1.0
CG A:HIS129 4.2 28.1 1.0
CG A:HIS124 4.2 34.9 1.0
CA A:CYS111 4.3 30.9 1.0
CA A:CYS106 4.6 26.2 1.0
CG A:TRP108 4.7 24.3 1.0
C A:CYS111 4.8 31.8 1.0
N A:TRP108 4.8 29.1 1.0
CA A:TRP108 4.9 28.4 1.0

Cobalt binding site 2 out of 5 in 2gli

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Cobalt binding site 2 out of 5 in the Five-Finger Gli/Dna Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Five-Finger Gli/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co259

b:24.6
occ:1.00
 NE2 A:HIS164 1.9 21.2 1.0
NE2 A:HIS160 2.0 19.4 1.0
SG A:CYS139 2.3 24.9 1.0
SG A:CYS144 2.6 32.1 1.0
CD2 A:HIS164 2.8 21.4 1.0
CE1 A:HIS160 2.9 18.9 1.0
CB A:CYS144 2.9 29.3 1.0
CE1 A:HIS164 3.0 20.2 1.0
CD2 A:HIS160 3.1 19.5 1.0
CB A:CYS139 3.2 25.5 1.0
NH2 A:ARG163 3.8 45.9 1.0
CG A:HIS164 4.0 19.0 1.0
ND1 A:HIS164 4.1 19.3 1.0
ND1 A:HIS160 4.1 18.9 1.0
CG A:HIS160 4.1 18.9 1.0
CA A:CYS144 4.2 27.6 1.0
CB A:TRP141 4.3 18.8 1.0
CA A:CYS139 4.7 26.6 1.0
CZ A:ARG163 4.7 43.9 1.0
SD A:MET161 4.8 16.4 1.0
CE A:MET161 4.9 12.3 1.0

Cobalt binding site 3 out of 5 in 2gli

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Cobalt binding site 3 out of 5 in the Five-Finger Gli/Dna Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Five-Finger Gli/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co260

b:22.9
occ:1.00
 NE2 A:HIS194 1.7 5.0 1.0
SG A:CYS177 2.0 25.7 1.0
NE2 A:HIS190 2.0 18.8 1.0
SG A:CYS172 2.3 23.6 1.0
CD2 A:HIS194 2.5 7.1 1.0
CE1 A:HIS194 2.9 7.4 1.0
CD2 A:HIS190 3.0 19.6 1.0
CE1 A:HIS190 3.0 16.4 1.0
CB A:CYS177 3.1 26.1 1.0
CB A:CYS172 3.3 18.1 1.0
CG A:HIS194 3.7 9.6 1.0
ND1 A:HIS194 3.9 9.7 1.0
ND1 A:HIS190 4.1 16.7 1.0
CG A:HIS190 4.2 16.6 1.0
CA A:CYS177 4.4 26.9 1.0
CB A:PHE174 4.6 17.4 1.0
C A:CYS177 4.6 28.2 1.0
CA A:CYS172 4.7 14.1 1.0
CB A:LYS179 4.9 30.6 1.0
CD A:LYS179 5.0 37.6 1.0
N A:LYS179 5.0 28.0 1.0

Cobalt binding site 4 out of 5 in 2gli

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Cobalt binding site 4 out of 5 in the Five-Finger Gli/Dna Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Five-Finger Gli/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co261

b:26.5
occ:1.00
 NE2 A:HIS220 2.1 17.1 1.0
SG A:CYS207 2.2 21.7 1.0
NE2 A:HIS225 2.3 19.3 1.0
SG A:CYS202 2.3 24.9 1.0
CB A:CYS207 2.4 25.2 1.0
CE1 A:HIS220 3.0 15.8 1.0
CD2 A:HIS220 3.1 14.5 1.0
CE1 A:HIS225 3.2 20.3 1.0
CB A:CYS202 3.2 25.8 1.0
CD2 A:HIS225 3.2 20.7 1.0
CA A:CYS207 3.9 29.2 1.0
ND1 A:HIS220 4.2 15.3 1.0
CG A:HIS220 4.2 15.3 1.0
ND1 A:HIS225 4.3 22.1 1.0
CG A:HIS225 4.3 21.5 1.0
C A:CYS207 4.6 30.0 1.0
CA A:CYS202 4.7 25.0 1.0
OE1 A:GLU205 4.7 30.4 1.0
N A:CYS207 4.7 31.4 1.0
CG2 A:THR224 4.9 21.3 1.0
CB A:LYS209 4.9 14.2 1.0
NE2 A:GLN221 4.9 22.7 1.0

Cobalt binding site 5 out of 5 in 2gli

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Cobalt binding site 5 out of 5 in the Five-Finger Gli/Dna Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Five-Finger Gli/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co262

b:25.1
occ:1.00
 NE2 A:HIS256 1.4 21.8 1.0
NE2 A:HIS251 2.0 22.9 1.0
CE1 A:HIS256 2.2 24.2 1.0
SG A:CYS233 2.2 20.6 1.0
SG A:CYS238 2.6 32.9 1.0
CD2 A:HIS256 2.6 18.8 1.0
CB A:CYS233 2.9 22.6 1.0
CE1 A:HIS251 2.9 23.3 1.0
CD2 A:HIS251 3.0 22.8 1.0
ND1 A:HIS256 3.3 22.5 1.0
CG A:HIS256 3.5 19.0 1.0
CB A:CYS238 4.0 33.0 1.0
CB A:LYS240 4.1 28.3 1.0
ND1 A:HIS251 4.1 23.7 1.0
CG A:HIS251 4.1 23.1 1.0
CG2 A:VAL255 4.2 19.6 1.0
CG2 A:VAL252 4.3 23.7 1.0
CB A:LEU235 4.3 23.1 1.0
CG A:LYS240 4.3 24.0 1.0
CA A:CYS233 4.4 24.1 1.0
CD1 A:LEU235 4.5 22.7 1.0
C A:CYS233 4.7 26.7 1.0
N A:LEU235 4.7 25.2 1.0
O A:LEU235 4.8 21.9 1.0
CB A:HIS256 4.9 18.8 1.0
CA A:VAL252 4.9 21.7 1.0

Reference:

N.P.Pavletich, C.O.Pabo. Crystal Structure of A Five-Finger Gli-Dna Complex: New Perspectives on Zinc Fingers. Science V. 261 1701 1993.
ISSN: ISSN 0036-8075
PubMed: 8378770
Page generated: Tue Jul 30 15:14:41 2024

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