Cobalt in PDB 2i7e: Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
(pdb code 2i7e). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the
Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine., PDB code: 2i7e:
Jump to Cobalt binding site number:
1;
2;
3;
4;
Cobalt binding site 1 out
of 4 in 2i7e
Go back to
Cobalt Binding Sites List in 2i7e
Cobalt binding site 1 out
of 4 in the Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co101
b:0.0
occ:1.00
|
CO
|
A:NCO101
|
0.0
|
0.0
|
1.0
|
N4
|
A:NCO101
|
1.9
|
0.0
|
1.0
|
N5
|
A:NCO101
|
1.9
|
0.0
|
1.0
|
N6
|
A:NCO101
|
1.9
|
0.0
|
1.0
|
N3
|
A:NCO101
|
1.9
|
0.0
|
1.0
|
N2
|
A:NCO101
|
1.9
|
0.0
|
1.0
|
N1
|
A:NCO101
|
2.0
|
0.0
|
1.0
|
HN43
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN42
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN41
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN51
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN52
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN53
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN62
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN61
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN63
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN32
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN31
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN33
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN23
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN21
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN22
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN13
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN11
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
HN12
|
A:NCO101
|
2.5
|
0.0
|
1.0
|
O6
|
A:G18
|
4.0
|
0.0
|
1.0
|
H42
|
A:C24
|
4.1
|
0.0
|
1.0
|
O4
|
A:U25
|
4.1
|
0.0
|
1.0
|
O6
|
A:G19
|
4.3
|
0.0
|
1.0
|
H41
|
A:C24
|
4.4
|
0.0
|
1.0
|
N4
|
A:C24
|
4.6
|
0.0
|
1.0
|
O6
|
A:G20
|
4.8
|
0.0
|
1.0
|
H3
|
A:U25
|
4.8
|
0.0
|
1.0
|
H1
|
A:G20
|
4.8
|
0.0
|
1.0
|
N7
|
A:G18
|
4.9
|
0.0
|
1.0
|
C6
|
A:G18
|
4.9
|
0.0
|
1.0
|
|
Cobalt binding site 2 out
of 4 in 2i7e
Go back to
Cobalt Binding Sites List in 2i7e
Cobalt binding site 2 out
of 4 in the Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co102
b:0.0
occ:1.00
|
CO
|
A:NCO102
|
0.0
|
0.0
|
1.0
|
N4
|
A:NCO102
|
1.9
|
0.0
|
1.0
|
N5
|
A:NCO102
|
1.9
|
0.0
|
1.0
|
N6
|
A:NCO102
|
1.9
|
0.0
|
1.0
|
N3
|
A:NCO102
|
1.9
|
0.0
|
1.0
|
N2
|
A:NCO102
|
1.9
|
0.0
|
1.0
|
N1
|
A:NCO102
|
2.0
|
0.0
|
1.0
|
HN43
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN42
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN41
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN51
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN52
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN53
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN63
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN61
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN62
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN31
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN32
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN33
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN23
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN21
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN22
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN13
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN11
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
HN12
|
A:NCO102
|
2.5
|
0.0
|
1.0
|
H62
|
A:A10
|
3.5
|
0.0
|
1.0
|
H61
|
A:A10
|
4.1
|
0.0
|
1.0
|
N6
|
A:A10
|
4.2
|
0.0
|
1.0
|
OP2
|
A:U7
|
4.3
|
0.0
|
1.0
|
O5'
|
A:U7
|
4.3
|
0.0
|
1.0
|
O6
|
A:G9
|
4.5
|
0.0
|
1.0
|
H5''
|
A:U7
|
4.8
|
0.0
|
1.0
|
P
|
A:U7
|
5.0
|
0.0
|
1.0
|
|
Cobalt binding site 3 out
of 4 in 2i7e
Go back to
Cobalt Binding Sites List in 2i7e
Cobalt binding site 3 out
of 4 in the Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Co103
b:0.0
occ:1.00
|
CO
|
B:NCO103
|
0.0
|
0.0
|
1.0
|
N4
|
B:NCO103
|
1.9
|
0.0
|
1.0
|
N5
|
B:NCO103
|
1.9
|
0.0
|
1.0
|
N6
|
B:NCO103
|
1.9
|
0.0
|
1.0
|
N3
|
B:NCO103
|
1.9
|
0.0
|
1.0
|
N2
|
B:NCO103
|
1.9
|
0.0
|
1.0
|
N1
|
B:NCO103
|
2.0
|
0.0
|
1.0
|
HN43
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN41
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN42
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN52
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN51
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN53
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN63
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN62
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN61
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN31
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN32
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN33
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN23
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN21
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN22
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN11
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN12
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
HN13
|
B:NCO103
|
2.5
|
0.0
|
1.0
|
O6
|
B:G61
|
4.1
|
0.0
|
1.0
|
N7
|
B:G61
|
4.5
|
0.0
|
1.0
|
O6
|
B:G62
|
4.6
|
0.0
|
1.0
|
O4
|
B:U68
|
4.6
|
0.0
|
1.0
|
H42
|
B:C67
|
4.7
|
0.0
|
1.0
|
N7
|
B:G60
|
4.9
|
0.0
|
1.0
|
C6
|
B:G61
|
5.0
|
0.0
|
1.0
|
|
Cobalt binding site 4 out
of 4 in 2i7e
Go back to
Cobalt Binding Sites List in 2i7e
Cobalt binding site 4 out
of 4 in the Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine.
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Gaaa Tetralooop Receptor Complex with Associated Cobalt Hexammine. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Co104
b:0.0
occ:1.00
|
CO
|
B:NCO104
|
0.0
|
0.0
|
1.0
|
N4
|
B:NCO104
|
1.9
|
0.0
|
1.0
|
N5
|
B:NCO104
|
1.9
|
0.0
|
1.0
|
N6
|
B:NCO104
|
1.9
|
0.0
|
1.0
|
N3
|
B:NCO104
|
1.9
|
0.0
|
1.0
|
N2
|
B:NCO104
|
1.9
|
0.0
|
1.0
|
N1
|
B:NCO104
|
2.0
|
0.0
|
1.0
|
HN43
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN42
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN41
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN51
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN52
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN53
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN61
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN62
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN63
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN32
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN33
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN31
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN22
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN23
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN21
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN13
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN11
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
HN12
|
B:NCO104
|
2.5
|
0.0
|
1.0
|
H62
|
B:A53
|
3.6
|
0.0
|
1.0
|
H61
|
B:A53
|
4.0
|
0.0
|
1.0
|
O6
|
B:G52
|
4.1
|
0.0
|
1.0
|
N6
|
B:A53
|
4.2
|
0.0
|
1.0
|
HO2'
|
B:A49
|
4.5
|
0.0
|
1.0
|
O4
|
B:U76
|
4.5
|
0.0
|
1.0
|
H41
|
B:C77
|
4.8
|
0.0
|
1.0
|
C6
|
B:G52
|
5.0
|
0.0
|
1.0
|
|
Reference:
J.H.Davis,
T.R.Foster,
M.Tonelli,
S.E.Butcher.
Role of Metal Ions in the Tetraloop-Receptor Complex As Analyzed By uc(Nmr). Rna V. 13 76 2007.
ISSN: ISSN 1355-8382
PubMed: 17119098
DOI: 10.1261/RNA.268307
Page generated: Tue Jul 30 15:16:07 2024
|