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Cobalt in PDB 2opc: Structure of Melampsora Lini Avirulence Protein, AVRL567-A

Protein crystallography data

The structure of Structure of Melampsora Lini Avirulence Protein, AVRL567-A, PDB code: 2opc was solved by G.Guncar, C.I.Wang, J.K.Forwood, T.Teh, A.M.Catanzariti, J.G.Ellis, P.N.Dodds, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.46 / 1.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.818, 52.379, 70.827, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 22.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Melampsora Lini Avirulence Protein, AVRL567-A (pdb code 2opc). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Melampsora Lini Avirulence Protein, AVRL567-A, PDB code: 2opc:

Cobalt binding site 1 out of 1 in 2opc

Go back to Cobalt Binding Sites List in 2opc
Cobalt binding site 1 out of 1 in the Structure of Melampsora Lini Avirulence Protein, AVRL567-A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Melampsora Lini Avirulence Protein, AVRL567-A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co201

b:17.0
occ:1.00
NE2 A:HIS85 2.0 31.6 1.0
N1 A:IMD202 2.1 19.8 1.0
SG A:CYS83 2.3 29.7 1.0
CD2 A:HIS85 2.9 30.2 1.0
C2 A:IMD202 3.0 24.0 1.0
CE1 A:HIS85 3.1 29.7 1.0
C5 A:IMD202 3.1 22.4 1.0
CB A:CYS83 3.3 29.8 1.0
CG A:HIS85 4.1 28.1 1.0
CG2 A:VAL147 4.1 30.2 1.0
ND1 A:HIS85 4.1 28.9 1.0
N3 A:IMD202 4.1 24.7 1.0
C4 A:IMD202 4.2 21.5 1.0
O A:HOH282 4.3 30.7 1.0
CB A:SER99 4.4 30.8 1.0
OG A:SER99 4.6 30.9 1.0
CA A:CYS83 4.6 28.2 1.0
O A:HOH274 4.7 38.0 1.0
O A:HOH259 4.8 32.3 1.0
C A:CYS83 5.0 28.4 1.0

Reference:

G.Guncar, C.I.Wang, J.K.Forwood, T.Teh, A.M.Catanzariti, J.G.Ellis, P.N.Dodds, B.Kobe. The Use of CO2+ For Crystallization and Structure Determination, Using A Conventional Monochromatic X-Ray Source, of Flax Rust Avirulence Protein. Acta Crystallogr.,Sect.F V. 63 209 2007.
ISSN: ESSN 1744-3091
PubMed: 17329816
DOI: 10.1107/S1744309107004599
Page generated: Sun Dec 13 10:38:32 2020

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