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Cobalt in PDB 2pr1: Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A

Protein crystallography data

The structure of Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A, PDB code: 2pr1 was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, I.I.Vorontsov, F.R.Collart, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.20
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 148.572, 148.572, 102.290, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 25.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A (pdb code 2pr1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A, PDB code: 2pr1:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 2pr1

Go back to Cobalt Binding Sites List in 2pr1
Cobalt binding site 1 out of 2 in the Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co202

b:71.0
occ:0.40
CD2 B:HIS147 3.3 79.8 1.0
N B:HIS147 3.4 72.7 1.0
O B:HIS147 3.7 74.8 1.0
NE2 B:HIS147 3.7 83.8 1.0
CA B:TRP146 3.9 73.2 1.0
O B:ASN127 4.1 76.8 1.0
CG B:HIS147 4.1 76.9 1.0
C B:TRP146 4.1 73.3 1.0
O B:ILE145 4.2 77.7 1.0
CD1 B:TRP146 4.2 66.9 1.0
CA B:HIS147 4.4 73.9 1.0
OD2 B:ASP149 4.4 83.7 1.0
C B:HIS147 4.4 74.0 1.0
CG B:LYS129 4.5 81.7 1.0
CG B:TRP146 4.5 70.2 1.0
CE1 B:HIS147 4.6 82.3 1.0
CB B:TRP146 4.7 72.5 1.0
CB B:HIS147 4.8 74.6 1.0
ND1 B:HIS147 4.8 80.5 1.0
NE1 B:TRP146 4.8 65.2 1.0
C B:ILE145 4.9 76.2 1.0
N B:TRP146 4.9 74.2 1.0

Cobalt binding site 2 out of 2 in 2pr1

Go back to Cobalt Binding Sites List in 2pr1
Cobalt binding site 2 out of 2 in the Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co203

b:67.8
occ:0.30
O B:THR2 4.4 80.9 1.0
O B:VAL4 4.8 69.8 1.0

Reference:

G.Minasov, L.Shuvalova, O.Kiryukhina, I.I.Vorontsov, F.R.Collart, A.Joachimiak, W.F.Anderson. Crystal Structure of the Bacillus Subtilis N-Acetyltransferase Ylbp Protein in Complex with Coenzyme-A. To Be Published.
Page generated: Sun Dec 13 10:38:37 2020

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