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Cobalt in PDB 2vos: Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp

Enzymatic activity of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp

All present enzymatic activity of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp:
6.3.2.17;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp, PDB code: 2vos was solved by P.G.Young, E.N.Baker, P.Metcalf, C.A.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.00 / 2.0
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 112.405, 112.405, 112.405, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 19.2

Other elements in 2vos:

The structure of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp (pdb code 2vos). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp, PDB code: 2vos:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in 2vos

Go back to Cobalt Binding Sites List in 2vos
Cobalt binding site 1 out of 4 in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1492

b:25.0
occ:0.33
 OD2 A:ASP326 2.0 30.3 1.0
O A:HOH2158 2.1 26.6 1.0
CG A:ASP326 3.0 36.1 1.0
OD1 A:ASP326 3.3 35.9 1.0
CB A:ASP326 4.4 34.7 1.0

Cobalt binding site 2 out of 4 in 2vos

Go back to Cobalt Binding Sites List in 2vos
Cobalt binding site 2 out of 4 in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1493

b:29.0
occ:1.00
 O1B A:ADP1490 2.0 29.2 1.0
O A:HOH2159 2.1 33.0 1.0
O A:HOH2160 2.2 32.7 1.0
OE2 A:GLU176 2.2 45.7 1.0
OG1 A:THR78 2.2 24.2 1.0
O A:SER100 2.2 32.3 1.0
CD A:GLU176 3.1 45.7 1.0
PB A:ADP1490 3.2 32.0 1.0
CB A:THR78 3.2 24.0 1.0
OE1 A:GLU176 3.3 45.9 1.0
C A:SER100 3.4 32.9 1.0
O2B A:ADP1490 3.5 33.6 1.0
O A:HOH2155 3.6 46.0 1.0
N A:THR78 3.7 25.0 1.0
CA A:THR78 4.0 24.6 1.0
O1A A:ADP1490 4.0 31.5 1.0
CD A:PRO101 4.0 32.6 1.0
O A:HOH2048 4.0 32.8 1.0
N A:PRO101 4.2 33.3 1.0
O3B A:ADP1490 4.3 30.9 1.0
O3A A:ADP1490 4.3 31.8 1.0
CG2 A:THR78 4.5 22.8 1.0
CG A:GLU176 4.5 40.8 1.0
CE A:LYS77 4.5 27.2 1.0
CB A:LYS77 4.5 25.4 1.0
N A:SER100 4.5 30.4 1.0
NH2 A:ARG340 4.6 65.2 1.0
CA A:SER100 4.6 33.2 1.0
PA A:ADP1490 4.7 32.8 1.0
NZ A:LYS77 4.7 27.5 1.0
C A:LYS77 4.8 26.4 1.0

Cobalt binding site 3 out of 4 in 2vos

Go back to Cobalt Binding Sites List in 2vos
Cobalt binding site 3 out of 4 in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1494

b:50.3
occ:1.00
 O A:HOH2162 1.8 33.8 1.0
O A:HOH2161 2.1 44.4 1.0
OD1 A:ASP205 2.2 42.3 1.0
NE2 A:HIS203 2.4 42.0 1.0
CG A:ASP205 3.1 40.6 1.0
CD2 A:HIS203 3.2 44.0 1.0
OD2 A:ASP205 3.3 44.7 1.0
CE1 A:HIS203 3.4 44.1 1.0
CG A:HIS203 4.4 38.9 1.0
ND1 A:HIS203 4.4 41.2 1.0
CB A:ASP205 4.5 35.9 1.0
CA A:ASP205 4.9 35.2 1.0

Cobalt binding site 4 out of 4 in 2vos

Go back to Cobalt Binding Sites List in 2vos
Cobalt binding site 4 out of 4 in the Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1495

b:41.5
occ:1.00
 O A:HOH2164 1.8 36.3 1.0
OD1 A:ASP457 1.9 29.8 1.0
OD1 A:ASP455 2.1 36.6 1.0
O A:HOH2163 2.3 44.9 1.0
O A:HOH2165 2.4 43.2 1.0
CG A:ASP457 3.0 38.5 1.0
CG A:ASP455 3.1 42.6 1.0
OD2 A:ASP455 3.3 46.5 1.0
OD2 A:ASP457 3.4 35.0 1.0
N A:ASP457 4.2 44.0 1.0
CB A:ASP457 4.3 42.2 1.0
CB A:ASP455 4.4 42.6 1.0
CA A:ASP457 4.6 43.6 1.0
CG2 A:VAL458 4.7 48.9 1.0
C A:ASP455 4.8 42.2 1.0
N A:PRO456 4.8 42.3 1.0
CA A:ASP455 4.8 42.9 1.0
CD A:PRO456 4.9 42.0 1.0
C A:ASP457 4.9 45.6 1.0

Reference:

P.G.Young, C.A.Smith, P.Metcalf, E.N.Baker. Structures of Mycobacterium Tuberculosisfolylpolyglutamate Synthase Complexed with Adp and Amppcp. Acta Crystallogr.,Sect.D V. 64 745 2008.
ISSN: ISSN 0907-4449
PubMed: 18566510
DOI: 10.1107/S0907444908012262
Page generated: Tue Jul 30 15:32:17 2024

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