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Cobalt in PDB 2wno: X-Ray Structure of CUB_C Domain From Tsg-6

Protein crystallography data

The structure of X-Ray Structure of CUB_C Domain From Tsg-6, PDB code: 2wno was solved by D.C.Briggs, A.J.Day, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.26 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.929, 56.929, 112.572, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.8

Other elements in 2wno:

The structure of X-Ray Structure of CUB_C Domain From Tsg-6 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the X-Ray Structure of CUB_C Domain From Tsg-6 (pdb code 2wno). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the X-Ray Structure of CUB_C Domain From Tsg-6, PDB code: 2wno:

Cobalt binding site 1 out of 1 in 2wno

Go back to Cobalt Binding Sites List in 2wno
Cobalt binding site 1 out of 1 in the X-Ray Structure of CUB_C Domain From Tsg-6


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of X-Ray Structure of CUB_C Domain From Tsg-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1250

b:38.2
occ:0.25
O A:HOH2104 2.5 50.4 1.0
O A:HOH2103 2.5 38.1 1.0
NE2 A:HIS203 2.7 39.1 1.0
O A:HOH2102 2.7 48.5 1.0
CD2 A:HIS203 3.2 38.4 1.0
CE1 A:HIS203 3.9 38.7 1.0
CG A:HIS203 4.5 38.2 1.0
ND1 A:HIS203 4.8 38.5 1.0

Reference:

D.C.Briggs, H.L.Birchenough, T.Ali, M.S.Rugg, J.P.Waltho, E.Ievoli, T.A.Jowitt, J.J.Enghild, R.P.Richter, A.Salustri, C.M.Milner, A.J.Day. Metal Ion-Dependent Heavy Chain Transfer Activity of Tsg-6 Mediates Assembly of the Cumulus-Oocyte Matrix. J.Biol.Chem. V. 290 28708 2015.
ISSN: ISSN 0021-9258
PubMed: 26468290
DOI: 10.1074/JBC.M115.669838
Page generated: Tue Jul 30 15:32:49 2024

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