Cobalt in PDB 2wyr: 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
Protein crystallography data
The structure of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit, PDB code: 2wyr
was solved by
F.M.D.Vellieux,
M.A.Dura,
B.Franzetti,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.68 /
2.25
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
113.263,
205.218,
113.488,
90.00,
100.78,
90.00
|
|
R / Rfree (%)
|
17 /
22
|
Cobalt Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Cobalt atom in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
(pdb code 2wyr). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 24 binding sites of Cobalt where determined in the
3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit, PDB code: 2wyr:
Jump to Cobalt binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Cobalt binding site 1 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 1 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co1332
b:28.6
occ:1.00
|
OE2
|
A:GLU205
|
2.1
|
33.2
|
1.0
|
|
OD2
|
A:ASP172
|
2.2
|
28.5
|
1.0
|
|
O
|
A:HOH5140
|
2.3
|
26.8
|
1.0
|
|
NE2
|
A:HIS306
|
2.3
|
28.9
|
1.0
|
|
O
|
A:HOH5139
|
2.4
|
44.3
|
1.0
|
|
CD
|
A:GLU205
|
2.8
|
26.1
|
1.0
|
|
OE1
|
A:GLU205
|
2.8
|
24.2
|
1.0
|
|
CG
|
A:ASP172
|
3.2
|
27.5
|
1.0
|
|
CD2
|
A:HIS306
|
3.2
|
23.4
|
1.0
|
|
CE1
|
A:HIS306
|
3.3
|
23.3
|
1.0
|
|
CO
|
A:CO1333
|
3.4
|
24.7
|
1.0
|
|
OD1
|
A:ASP172
|
3.4
|
27.6
|
1.0
|
|
O
|
A:HOH5086
|
4.0
|
18.0
|
1.0
|
|
O
|
A:HOH5120
|
4.2
|
40.2
|
1.0
|
|
CG
|
A:GLU205
|
4.2
|
23.1
|
1.0
|
|
OE1
|
A:GLU204
|
4.4
|
24.5
|
1.0
|
|
CG
|
A:HIS306
|
4.4
|
26.6
|
1.0
|
|
ND1
|
A:HIS306
|
4.4
|
30.0
|
1.0
|
|
NE2
|
A:HIS61
|
4.5
|
18.0
|
1.0
|
|
CB
|
A:ASP172
|
4.5
|
21.5
|
1.0
|
|
CE1
|
A:HIS61
|
4.6
|
14.1
|
1.0
|
|
OG
|
A:SER228
|
4.9
|
45.4
|
1.0
|
|
NE2
|
C:HIS777
|
4.9
|
43.0
|
1.0
|
|
CG2
|
A:ILE65
|
5.0
|
19.3
|
1.0
|
|
Cobalt binding site 2 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 2 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co1333
b:24.7
occ:1.00
|
OD1
|
A:ASP172
|
2.1
|
27.6
|
1.0
|
|
O
|
A:HOH5140
|
2.1
|
26.8
|
1.0
|
|
OD1
|
A:ASP227
|
2.2
|
30.2
|
1.0
|
|
NE2
|
A:HIS61
|
2.2
|
18.0
|
1.0
|
|
OD2
|
A:ASP227
|
2.7
|
31.7
|
1.0
|
|
CG
|
A:ASP227
|
2.8
|
29.0
|
1.0
|
|
CG
|
A:ASP172
|
2.9
|
27.5
|
1.0
|
|
CD2
|
A:HIS61
|
3.1
|
19.3
|
1.0
|
|
CE1
|
A:HIS61
|
3.2
|
14.1
|
1.0
|
|
OD2
|
A:ASP172
|
3.2
|
28.5
|
1.0
|
|
CO
|
A:CO1332
|
3.4
|
28.6
|
1.0
|
|
O
|
A:HOH5120
|
3.5
|
40.2
|
1.0
|
|
OG
|
A:SER228
|
3.6
|
45.4
|
1.0
|
|
O
|
A:HOH5139
|
3.8
|
44.3
|
1.0
|
|
OE2
|
A:GLU205
|
3.8
|
33.2
|
1.0
|
|
OE1
|
A:GLU204
|
3.9
|
24.5
|
1.0
|
|
CB
|
A:ASP173
|
4.0
|
15.8
|
1.0
|
|
OE2
|
A:GLU204
|
4.0
|
26.3
|
1.0
|
|
CD
|
A:GLU204
|
4.1
|
24.0
|
1.0
|
|
CB
|
A:ASP172
|
4.2
|
21.5
|
1.0
|
|
CB
|
A:ASP227
|
4.3
|
28.8
|
1.0
|
|
ND1
|
A:HIS61
|
4.3
|
19.8
|
1.0
|
|
CG
|
A:HIS61
|
4.3
|
19.8
|
1.0
|
|
CG
|
A:ASP173
|
4.4
|
27.1
|
1.0
|
|
N
|
A:SER228
|
4.5
|
20.3
|
1.0
|
|
CD
|
A:GLU205
|
4.6
|
26.1
|
1.0
|
|
OD2
|
A:ASP173
|
4.7
|
26.4
|
1.0
|
|
C
|
A:ASP172
|
4.7
|
24.0
|
1.0
|
|
N
|
A:ASP173
|
4.7
|
22.2
|
1.0
|
|
CA
|
A:ASP173
|
4.7
|
20.5
|
1.0
|
|
CA
|
A:ASP172
|
4.7
|
24.9
|
1.0
|
|
CA
|
A:ASP227
|
4.9
|
26.5
|
1.0
|
|
CB
|
A:SER228
|
5.0
|
27.2
|
1.0
|
|
Cobalt binding site 3 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 3 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Co1663
b:30.6
occ:1.00
|
OE2
|
B:GLU536
|
2.0
|
27.1
|
1.0
|
|
OD2
|
B:ASP503
|
2.2
|
47.0
|
1.0
|
|
NE2
|
B:HIS637
|
2.2
|
29.4
|
1.0
|
|
O
|
B:HOH5121
|
2.4
|
24.7
|
1.0
|
|
CD
|
B:GLU536
|
2.7
|
30.1
|
1.0
|
|
OE1
|
B:GLU536
|
2.8
|
29.4
|
1.0
|
|
CD2
|
B:HIS637
|
3.1
|
25.0
|
1.0
|
|
CG
|
B:ASP503
|
3.1
|
35.3
|
1.0
|
|
CE1
|
B:HIS637
|
3.3
|
26.1
|
1.0
|
|
OD1
|
B:ASP503
|
3.4
|
38.2
|
1.0
|
|
CO
|
B:CO1664
|
3.4
|
25.8
|
1.0
|
|
O
|
B:HOH5122
|
3.5
|
51.2
|
1.0
|
|
O
|
B:HOH5075
|
4.0
|
17.2
|
1.0
|
|
CG
|
B:GLU536
|
4.2
|
27.8
|
1.0
|
|
CG
|
B:HIS637
|
4.3
|
33.5
|
1.0
|
|
ND1
|
B:HIS637
|
4.4
|
32.7
|
1.0
|
|
CB
|
B:ASP503
|
4.4
|
40.5
|
1.0
|
|
OE1
|
B:GLU535
|
4.5
|
38.1
|
1.0
|
|
CE1
|
B:HIS392
|
4.6
|
25.1
|
1.0
|
|
NE2
|
B:HIS392
|
4.6
|
20.2
|
1.0
|
|
NE2
|
K:HIS3425
|
4.7
|
60.8
|
1.0
|
|
O
|
B:HOH5077
|
4.8
|
40.0
|
1.0
|
|
O
|
B:HOH5079
|
4.9
|
25.4
|
1.0
|
|
CG2
|
B:ILE396
|
4.9
|
18.7
|
1.0
|
|
OG
|
B:SER559
|
4.9
|
43.6
|
1.0
|
|
Cobalt binding site 4 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 4 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Co1664
b:25.8
occ:1.00
|
OD1
|
B:ASP503
|
2.1
|
38.2
|
1.0
|
|
OD1
|
B:ASP558
|
2.1
|
28.8
|
1.0
|
|
NE2
|
B:HIS392
|
2.2
|
20.2
|
1.0
|
|
O
|
B:HOH5121
|
2.3
|
24.7
|
1.0
|
|
OD2
|
B:ASP558
|
2.7
|
37.7
|
1.0
|
|
CG
|
B:ASP558
|
2.7
|
38.6
|
1.0
|
|
CG
|
B:ASP503
|
3.0
|
35.3
|
1.0
|
|
CE1
|
B:HIS392
|
3.1
|
25.1
|
1.0
|
|
CD2
|
B:HIS392
|
3.2
|
16.9
|
1.0
|
|
O
|
B:HOH5122
|
3.3
|
51.2
|
1.0
|
|
OD2
|
B:ASP503
|
3.4
|
47.0
|
1.0
|
|
CO
|
B:CO1663
|
3.4
|
30.6
|
1.0
|
|
O
|
B:HOH5077
|
3.4
|
40.0
|
1.0
|
|
OG
|
B:SER559
|
3.7
|
43.6
|
1.0
|
|
OE1
|
B:GLU535
|
3.9
|
38.1
|
1.0
|
|
CB
|
B:ASP504
|
4.0
|
23.2
|
1.0
|
|
OE2
|
B:GLU536
|
4.0
|
27.1
|
1.0
|
|
OE2
|
B:GLU535
|
4.1
|
39.2
|
1.0
|
|
CD
|
B:GLU535
|
4.1
|
37.8
|
1.0
|
|
CB
|
B:ASP558
|
4.2
|
35.3
|
1.0
|
|
ND1
|
B:HIS392
|
4.2
|
25.7
|
1.0
|
|
CG
|
B:HIS392
|
4.3
|
26.7
|
1.0
|
|
CB
|
B:ASP503
|
4.4
|
40.5
|
1.0
|
|
CG
|
B:ASP504
|
4.5
|
30.2
|
1.0
|
|
N
|
B:SER559
|
4.5
|
24.2
|
1.0
|
|
CD
|
B:GLU536
|
4.6
|
30.1
|
1.0
|
|
C
|
B:ASP503
|
4.8
|
27.0
|
1.0
|
|
N
|
B:ASP504
|
4.8
|
28.7
|
1.0
|
|
CA
|
B:ASP504
|
4.8
|
28.9
|
1.0
|
|
CA
|
B:ASP503
|
4.8
|
33.1
|
1.0
|
|
OD2
|
B:ASP504
|
4.8
|
27.6
|
1.0
|
|
CA
|
B:ASP558
|
4.9
|
29.8
|
1.0
|
|
Cobalt binding site 5 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 5 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Co1994
b:30.8
occ:1.00
|
OE2
|
C:GLU867
|
2.2
|
28.3
|
1.0
|
|
OD2
|
C:ASP834
|
2.2
|
26.4
|
1.0
|
|
O
|
C:HOH5145
|
2.2
|
47.4
|
1.0
|
|
NE2
|
C:HIS968
|
2.3
|
26.9
|
1.0
|
|
O
|
C:HOH5146
|
2.7
|
21.5
|
1.0
|
|
OE1
|
C:GLU867
|
2.7
|
20.7
|
1.0
|
|
CD
|
C:GLU867
|
2.8
|
27.3
|
1.0
|
|
CG
|
C:ASP834
|
3.2
|
28.2
|
1.0
|
|
CD2
|
C:HIS968
|
3.2
|
23.7
|
1.0
|
|
CE1
|
C:HIS968
|
3.3
|
26.1
|
1.0
|
|
CO
|
C:CO1995
|
3.3
|
22.8
|
1.0
|
|
OD1
|
C:ASP834
|
3.4
|
25.3
|
1.0
|
|
O
|
C:HOH5115
|
3.9
|
41.4
|
1.0
|
|
O
|
C:HOH5090
|
4.2
|
22.8
|
1.0
|
|
CG
|
C:GLU867
|
4.3
|
15.9
|
1.0
|
|
ND1
|
C:HIS968
|
4.4
|
28.8
|
1.0
|
|
CG
|
C:HIS968
|
4.4
|
33.1
|
1.0
|
|
CD1
|
C:LEU967
|
4.4
|
56.6
|
1.0
|
|
NE2
|
C:HIS723
|
4.5
|
22.2
|
1.0
|
|
CB
|
C:ASP834
|
4.5
|
20.1
|
1.0
|
|
OE1
|
C:GLU866
|
4.6
|
32.5
|
1.0
|
|
CE1
|
C:HIS723
|
4.6
|
19.1
|
1.0
|
|
O
|
C:HOH5095
|
4.9
|
19.8
|
1.0
|
|
CG2
|
C:ILE727
|
4.9
|
18.8
|
1.0
|
|
NE2
|
A:HIS115
|
5.0
|
48.1
|
1.0
|
|
Cobalt binding site 6 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 6 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Co1995
b:22.8
occ:1.00
|
OD1
|
C:ASP834
|
2.0
|
25.3
|
1.0
|
|
OD1
|
C:ASP889
|
2.1
|
22.2
|
1.0
|
|
NE2
|
C:HIS723
|
2.3
|
22.2
|
1.0
|
|
O
|
C:HOH5146
|
2.3
|
21.5
|
1.0
|
|
OD2
|
C:ASP889
|
2.6
|
24.7
|
1.0
|
|
CG
|
C:ASP889
|
2.7
|
26.4
|
1.0
|
|
CG
|
C:ASP834
|
3.0
|
28.2
|
1.0
|
|
CD2
|
C:HIS723
|
3.2
|
17.1
|
1.0
|
|
CE1
|
C:HIS723
|
3.3
|
19.1
|
1.0
|
|
CO
|
C:CO1994
|
3.3
|
30.8
|
1.0
|
|
OD2
|
C:ASP834
|
3.4
|
26.4
|
1.0
|
|
O
|
C:HOH5115
|
3.6
|
41.4
|
1.0
|
|
OE2
|
C:GLU867
|
3.9
|
28.3
|
1.0
|
|
CB
|
C:ASP835
|
4.0
|
12.0
|
1.0
|
|
OE2
|
C:GLU866
|
4.0
|
38.8
|
1.0
|
|
OE1
|
C:GLU866
|
4.0
|
32.5
|
1.0
|
|
O
|
C:HOH5145
|
4.0
|
47.4
|
1.0
|
|
OG
|
C:SER890
|
4.1
|
33.8
|
1.0
|
|
CD
|
C:GLU866
|
4.1
|
35.2
|
1.0
|
|
CB
|
C:ASP889
|
4.3
|
20.9
|
1.0
|
|
CB
|
C:ASP834
|
4.3
|
20.1
|
1.0
|
|
CG
|
C:HIS723
|
4.4
|
27.5
|
1.0
|
|
ND1
|
C:HIS723
|
4.4
|
19.5
|
1.0
|
|
CG
|
C:ASP835
|
4.4
|
26.7
|
1.0
|
|
N
|
C:SER890
|
4.6
|
24.6
|
1.0
|
|
CD
|
C:GLU867
|
4.6
|
27.3
|
1.0
|
|
OD2
|
C:ASP835
|
4.7
|
25.8
|
1.0
|
|
N
|
C:ASP835
|
4.7
|
19.6
|
1.0
|
|
C
|
C:ASP834
|
4.7
|
17.8
|
1.0
|
|
CA
|
C:ASP835
|
4.8
|
22.1
|
1.0
|
|
CA
|
C:ASP834
|
4.8
|
24.2
|
1.0
|
|
CB
|
C:SER890
|
4.8
|
28.8
|
1.0
|
|
O
|
C:HOH5104
|
4.9
|
20.8
|
1.0
|
|
CA
|
C:ASP889
|
5.0
|
26.4
|
1.0
|
|
Cobalt binding site 7 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 7 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 7 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Co2325
b:35.7
occ:1.00
|
OD2
|
D:ASP1165
|
2.2
|
40.5
|
1.0
|
|
OE2
|
D:GLU1198
|
2.2
|
34.4
|
1.0
|
|
NE2
|
D:HIS1299
|
2.2
|
35.9
|
1.0
|
|
OE1
|
D:GLU1198
|
2.5
|
23.5
|
1.0
|
|
CD
|
D:GLU1198
|
2.7
|
30.2
|
1.0
|
|
O
|
D:HOH5125
|
2.7
|
38.9
|
1.0
|
|
CG
|
D:ASP1165
|
3.1
|
33.4
|
1.0
|
|
CD2
|
D:HIS1299
|
3.1
|
36.7
|
1.0
|
|
CE1
|
D:HIS1299
|
3.2
|
31.3
|
1.0
|
|
O
|
D:HOH5124
|
3.3
|
40.5
|
1.0
|
|
CO
|
D:CO2326
|
3.4
|
28.9
|
1.0
|
|
OD1
|
D:ASP1165
|
3.4
|
25.6
|
1.0
|
|
O
|
D:HOH5088
|
3.9
|
26.3
|
1.0
|
|
CG
|
D:GLU1198
|
4.2
|
29.3
|
1.0
|
|
CG
|
D:HIS1299
|
4.3
|
36.5
|
1.0
|
|
ND1
|
D:HIS1299
|
4.3
|
34.6
|
1.0
|
|
CB
|
D:ASP1165
|
4.5
|
29.6
|
1.0
|
|
OE1
|
D:GLU1197
|
4.5
|
40.1
|
1.0
|
|
NE2
|
J:HIS3094
|
4.5
|
60.9
|
1.0
|
|
CD1
|
D:LEU1298
|
4.6
|
52.3
|
1.0
|
|
NE2
|
D:HIS1054
|
4.6
|
28.3
|
1.0
|
|
CE1
|
D:HIS1054
|
4.8
|
26.5
|
1.0
|
|
OG
|
D:SER1221
|
4.9
|
44.7
|
1.0
|
|
CG2
|
D:ILE1058
|
4.9
|
23.3
|
1.0
|
|
CE1
|
J:HIS3094
|
5.0
|
62.1
|
1.0
|
|
O
|
D:HOH5044
|
5.0
|
33.3
|
1.0
|
|
Cobalt binding site 8 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 8 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 8 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Co2326
b:28.9
occ:1.00
|
OD1
|
D:ASP1165
|
2.0
|
25.6
|
1.0
|
|
NE2
|
D:HIS1054
|
2.2
|
28.3
|
1.0
|
|
OD1
|
D:ASP1220
|
2.3
|
34.5
|
1.0
|
|
OD2
|
D:ASP1220
|
2.6
|
44.7
|
1.0
|
|
O
|
D:HOH5125
|
2.7
|
38.9
|
1.0
|
|
CG
|
D:ASP1220
|
2.8
|
37.2
|
1.0
|
|
CG
|
D:ASP1165
|
3.0
|
33.4
|
1.0
|
|
CD2
|
D:HIS1054
|
3.1
|
18.8
|
1.0
|
|
CE1
|
D:HIS1054
|
3.2
|
26.5
|
1.0
|
|
O
|
D:HOH5124
|
3.4
|
40.5
|
1.0
|
|
CO
|
D:CO2325
|
3.4
|
35.7
|
1.0
|
|
OD2
|
D:ASP1165
|
3.4
|
40.5
|
1.0
|
|
OE1
|
D:GLU1197
|
3.6
|
40.1
|
1.0
|
|
OG
|
D:SER1221
|
3.7
|
44.7
|
1.0
|
|
CB
|
D:ASP1166
|
3.8
|
27.0
|
1.0
|
|
OE2
|
D:GLU1198
|
3.8
|
34.4
|
1.0
|
|
OE2
|
D:GLU1197
|
4.0
|
39.5
|
1.0
|
|
CD
|
D:GLU1197
|
4.0
|
38.5
|
1.0
|
|
CG
|
D:HIS1054
|
4.3
|
27.0
|
1.0
|
|
CB
|
D:ASP1220
|
4.3
|
26.0
|
1.0
|
|
ND1
|
D:HIS1054
|
4.3
|
25.7
|
1.0
|
|
CB
|
D:ASP1165
|
4.3
|
29.6
|
1.0
|
|
CD
|
D:GLU1198
|
4.4
|
30.2
|
1.0
|
|
CG
|
D:ASP1166
|
4.5
|
30.2
|
1.0
|
|
N
|
D:SER1221
|
4.6
|
30.1
|
1.0
|
|
N
|
D:ASP1166
|
4.6
|
20.1
|
1.0
|
|
CA
|
D:ASP1166
|
4.7
|
26.1
|
1.0
|
|
C
|
D:ASP1165
|
4.7
|
24.6
|
1.0
|
|
OE1
|
D:GLU1198
|
4.7
|
23.5
|
1.0
|
|
CA
|
D:ASP1165
|
4.8
|
26.0
|
1.0
|
|
OD2
|
D:ASP1166
|
4.8
|
31.1
|
1.0
|
|
O
|
D:HOH5096
|
4.9
|
31.9
|
1.0
|
|
CA
|
D:ASP1220
|
4.9
|
28.8
|
1.0
|
|
Cobalt binding site 9 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 9 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 9 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Co2656
b:30.9
occ:1.00
|
OE2
|
E:GLU1529
|
2.0
|
25.4
|
1.0
|
|
OD2
|
E:ASP1496
|
2.1
|
30.2
|
1.0
|
|
NE2
|
E:HIS1630
|
2.2
|
24.3
|
1.0
|
|
CD
|
E:GLU1529
|
2.7
|
30.7
|
1.0
|
|
OE1
|
E:GLU1529
|
2.7
|
25.9
|
1.0
|
|
CG
|
E:ASP1496
|
3.1
|
28.8
|
1.0
|
|
CD2
|
E:HIS1630
|
3.2
|
22.8
|
1.0
|
|
CE1
|
E:HIS1630
|
3.2
|
23.9
|
1.0
|
|
OD1
|
E:ASP1496
|
3.3
|
25.8
|
1.0
|
|
CO
|
E:CO2657
|
3.4
|
27.1
|
1.0
|
|
O
|
E:HOH5091
|
3.9
|
23.4
|
1.0
|
|
CG
|
E:GLU1529
|
4.2
|
21.1
|
1.0
|
|
ND1
|
E:HIS1630
|
4.3
|
21.2
|
1.0
|
|
CG
|
E:HIS1630
|
4.3
|
25.2
|
1.0
|
|
CB
|
E:ASP1496
|
4.4
|
22.2
|
1.0
|
|
CE1
|
E:HIS1385
|
4.5
|
20.1
|
1.0
|
|
OE1
|
E:GLU1528
|
4.5
|
25.7
|
1.0
|
|
NE2
|
E:HIS1385
|
4.6
|
21.4
|
1.0
|
|
NE2
|
H:HIS2432
|
4.7
|
50.5
|
1.0
|
|
CG2
|
E:ILE1389
|
5.0
|
20.4
|
1.0
|
|
Cobalt binding site 10 out
of 24 in 2wyr
Go back to
Cobalt Binding Sites List in 2wyr
Cobalt binding site 10 out
of 24 in the 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit
 Mono view
 Stereo pair view
|
|
A full contact list of Cobalt with other atoms in the Co binding
site number 10 of 3-D Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Co2657
b:27.1
occ:1.00
|
OD1
|
E:ASP1496
|
2.0
|
25.8
|
1.0
|
|
NE2
|
E:HIS1385
|
2.1
|
21.4
|
1.0
|
|
OD1
|
E:ASP1551
|
2.2
|
32.9
|
1.0
|
|
OD2
|
E:ASP1551
|
2.6
|
36.6
|
1.0
|
|
CG
|
E:ASP1551
|
2.7
|
33.9
|
1.0
|
|
CE1
|
E:HIS1385
|
2.9
|
20.1
|
1.0
|
|
CG
|
E:ASP1496
|
3.0
|
28.8
|
1.0
|
|
CD2
|
E:HIS1385
|
3.2
|
18.8
|
1.0
|
|
CO
|
E:CO2656
|
3.4
|
30.9
|
1.0
|
|
OD2
|
E:ASP1496
|
3.5
|
30.2
|
1.0
|
|
OE2
|
E:GLU1529
|
3.8
|
25.4
|
1.0
|
|
OE1
|
E:GLU1528
|
3.8
|
25.7
|
1.0
|
|
CB
|
E:ASP1497
|
3.9
|
21.4
|
1.0
|
|
OG
|
E:SER1552
|
4.0
|
31.7
|
1.0
|
|
ND1
|
E:HIS1385
|
4.1
|
19.3
|
1.0
|
|
CD
|
E:GLU1528
|
4.1
|
26.9
|
1.0
|
|
OE2
|
E:GLU1528
|
4.2
|
35.5
|
1.0
|
|
CB
|
E:ASP1551
|
4.2
|
35.9
|
1.0
|
|
CG
|
E:HIS1385
|
4.3
|
18.7
|
1.0
|
|
CB
|
E:ASP1496
|
4.3
|
22.2
|
1.0
|
|
N
|
E:SER1552
|
4.5
|
18.7
|
1.0
|
|
CG
|
E:ASP1497
|
4.6
|
27.2
|
1.0
|
|
CD
|
E:GLU1529
|
4.6
|
30.7
|
1.0
|
|
N
|
E:ASP1497
|
4.7
|
28.5
|
1.0
|
|
C
|
E:ASP1496
|
4.7
|
21.3
|
1.0
|
|
CA
|
E:ASP1496
|
4.7
|
26.0
|
1.0
|
|
CA
|
E:ASP1497
|
4.7
|
28.4
|
1.0
|
|
CB
|
E:SER1552
|
4.9
|
33.4
|
1.0
|
|
OD2
|
E:ASP1497
|
4.9
|
20.5
|
1.0
|
|
CA
|
E:ASP1551
|
4.9
|
31.3
|
1.0
|
|
O
|
E:HOH5124
|
5.0
|
17.8
|
1.0
|
|
Reference:
M.A.Dura,
F.M.D.Vellieux.
Structure of PHTET1-12S, Dodecamer in the Asymmetric Unit To Be Published.
Page generated: Tue Jul 30 15:33:09 2024
|
