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Cobalt in PDB 2xg4: E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C

Protein crystallography data

The structure of E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C, PDB code: 2xg4 was solved by H.Remaut, G.Phan, F.Buelens, E.Chorell, J.S.Pinkner, S.Edvinsson, F.Almqvist, S.J.Hultgren, G.Waksman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 104.100, 148.730, 82.639, 90.00, 90.00, 90.00
R / Rfree (%) 18.332 / 21.745

Cobalt Binding Sites:

The binding sites of Cobalt atom in the E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C (pdb code 2xg4). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C, PDB code: 2xg4:

Cobalt binding site 1 out of 1 in 2xg4

Go back to Cobalt Binding Sites List in 2xg4
Cobalt binding site 1 out of 1 in the E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound to Pilus Biogenesis Inhibitor, Pilicide 2C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1174

b:47.7
occ:0.50
NE2 B:HIS28 2.2 39.7 1.0
CE1 B:HIS28 3.1 33.4 1.0
CD2 B:HIS28 3.3 33.0 1.0
ND1 B:HIS28 4.2 37.0 1.0
O B:ALA25 4.3 50.1 1.0
CG B:HIS28 4.4 32.6 1.0

Reference:

E.Chorell, J.S.Pinkner, G.Phan, S.Edvinsson, F.Buelens, H.Remaut, G.Waksman, S.J.Hultgren, F.Almqvist. Design and Synthesis of C-2 Substituted Thiazolo and Dihydrothiazolo Ring-Fused 2-Pyridones: Pilicides with Increased Antivirulence Activity. J.Med.Chem. V. 53 5690 2010.
ISSN: ISSN 0022-2623
PubMed: 20586493
DOI: 10.1021/JM100470T
Page generated: Tue Jul 30 15:33:55 2024

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