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Cobalt in PDB 2xre: Detection of Cobalt in Previously Unassigned Human SENP1 Structure

Protein crystallography data

The structure of Detection of Cobalt in Previously Unassigned Human SENP1 Structure, PDB code: 2xre was solved by V.Rimsa, T.Eadsforth, R.T.Hay, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.60 / 2.45
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.981, 71.981, 200.640, 90.00, 90.00, 120.00
R / Rfree (%) 23.7 / 31.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Detection of Cobalt in Previously Unassigned Human SENP1 Structure (pdb code 2xre). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Detection of Cobalt in Previously Unassigned Human SENP1 Structure, PDB code: 2xre:

Cobalt binding site 1 out of 1 in 2xre

Go back to Cobalt Binding Sites List in 2xre
Cobalt binding site 1 out of 1 in the Detection of Cobalt in Previously Unassigned Human SENP1 Structure


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Detection of Cobalt in Previously Unassigned Human SENP1 Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1651

b:11.6
occ:0.50
OE1 B:GLU430 1.6 15.8 1.0
NE2 B:HIS640 1.7 33.1 1.0
CD B:GLU430 2.5 31.7 1.0
CE1 B:HIS640 2.5 33.9 1.0
OE2 B:GLU430 2.7 25.1 1.0
CD2 B:HIS640 2.9 33.2 1.0
ND1 B:HIS640 3.7 34.0 1.0
CG B:HIS640 3.9 33.5 1.0
CG B:GLU430 3.9 36.2 1.0
NE1 B:TRP636 4.3 30.3 1.0
CZ2 B:TRP636 4.8 30.5 1.0
CE2 B:TRP636 4.8 26.6 1.0
CB B:GLU430 4.9 47.4 1.0

Reference:

V.Rimsa, T.Eadsforth, W.N.Hunter. The Role of CO2+ in the Crystallization of Human SENP1 and Comments on the Limitations of Automated Refinement Protocols Acta Crystallogr.,Sect.F V. 67 442 2011.
ISSN: ESSN 1744-3091
PubMed: 21505236
DOI: 10.1107/S1744309111005835
Page generated: Tue Jul 30 15:37:34 2024

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