Atomistry » Cobalt » PDB 2xwq-3bbi » 2z06
Atomistry »
  Cobalt »
    PDB 2xwq-3bbi »
      2z06 »

Cobalt in PDB 2z06: Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus, PDB code: 2z06 was solved by M.Kanagawa, S.Kuramitsu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.20 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.602, 110.928, 116.273, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 24.6

Cobalt Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Cobalt atom in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus (pdb code 2z06). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 13 binding sites of Cobalt where determined in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus, PDB code: 2z06:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cobalt binding site 1 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 1 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co253

b:57.3
occ:1.00
 ND2 A:ASN65 2.5 46.0 1.0
CE1 A:HIS145 2.5 24.8 1.0
ND1 A:HIS170 2.7 21.0 1.0
OE2 A:GLU37 2.8 36.3 1.0
OD1 A:ASN65 3.0 48.8 1.0
O A:HOH317 3.0 26.9 1.0
NE2 A:HIS145 3.1 25.3 1.0
O A:HOH364 3.1 25.3 1.0
CG A:ASN65 3.2 45.9 1.0
OE1 A:GLU37 3.2 38.4 1.0
CD A:GLU37 3.4 35.6 1.0
CE1 A:HIS170 3.4 22.1 1.0
ND1 A:HIS145 3.7 25.1 1.0
CG A:HIS170 3.9 21.3 1.0
ND1 A:HIS66 4.3 51.5 1.0
CB A:HIS170 4.3 19.3 1.0
CA A:HIS170 4.4 19.2 1.0
CD2 A:HIS145 4.4 24.4 1.0
CE1 A:HIS66 4.6 52.4 1.0
CB A:ASN65 4.6 42.7 1.0
NE2 A:HIS170 4.6 22.8 1.0
O A:HIS170 4.7 20.7 1.0
CG A:HIS145 4.7 24.9 1.0
N A:ASN65 4.8 35.3 1.0
CG A:GLU37 4.8 33.0 1.0
CD2 A:HIS170 4.9 21.0 1.0
NE2 A:HIS172 5.0 30.0 1.0

Cobalt binding site 2 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 2 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co253

b:51.0
occ:1.00
 ND1 C:HIS170 2.5 26.1 1.0
OD1 C:ASN65 2.5 48.5 1.0
CE1 C:HIS145 2.6 26.3 1.0
OE2 C:GLU37 2.8 48.6 1.0
ND2 C:ASN65 2.9 50.0 1.0
O C:HOH387 2.9 31.5 1.0
NE2 C:HIS145 2.9 24.4 1.0
CG C:ASN65 3.0 47.2 1.0
O C:HOH339 3.1 28.4 1.0
CE1 C:HIS170 3.1 25.9 1.0
OE1 C:GLU37 3.2 47.5 1.0
CD C:GLU37 3.3 46.1 1.0
CG C:HIS170 3.7 26.8 1.0
ND1 C:HIS145 3.9 24.8 1.0
CB C:HIS170 4.2 26.4 1.0
CA C:HIS170 4.2 27.5 1.0
CD2 C:HIS145 4.2 22.5 1.0
NE2 C:HIS170 4.4 28.7 1.0
ND1 C:HIS66 4.5 47.7 1.0
CB C:ASN65 4.5 44.8 1.0
O C:HIS170 4.6 28.2 1.0
CG C:GLU37 4.6 42.4 1.0
CD2 C:HIS170 4.6 27.1 1.0
CG C:HIS145 4.7 22.9 1.0
NE2 C:HIS172 4.8 36.2 1.0
CE1 C:HIS66 4.8 49.0 1.0
N C:ASN65 4.8 41.2 1.0
ND2 C:ASN38 4.9 34.0 1.0
C C:HIS170 4.9 28.2 1.0

Cobalt binding site 3 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 3 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co254

b:74.5
occ:1.00
 OH A:TYR247 3.1 31.8 1.0
NH2 A:ARG28 3.4 45.3 1.0
NH1 A:ARG28 3.6 45.1 1.0
O A:HOH384 3.8 57.1 1.0
CE2 A:TYR247 3.9 31.3 1.0
CZ A:ARG28 4.0 44.7 1.0
CZ A:TYR247 4.0 31.1 1.0
CG2 A:ILE25 4.3 34.7 1.0
NE2 A:HIS21 4.5 31.7 1.0
CE1 A:HIS21 4.8 31.3 1.0

Cobalt binding site 4 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 4 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co253

b:59.2
occ:1.00
 ND1 B:HIS170 2.4 28.6 1.0
OE2 B:GLU37 2.5 45.0 1.0
CE1 B:HIS145 2.6 25.5 1.0
OD1 B:ASN65 2.6 42.4 1.0
NE2 B:HIS145 2.9 25.4 1.0
OE1 B:GLU37 3.0 46.6 1.0
O B:HOH335 3.1 42.9 1.0
CE1 B:HIS170 3.1 26.4 1.0
CD B:GLU37 3.1 43.0 1.0
O B:HOH369 3.2 33.3 1.0
CG B:ASN65 3.6 42.6 1.0
CG B:HIS170 3.6 27.2 1.0
ND1 B:HIS145 3.8 26.5 1.0
ND2 B:ASN65 3.9 44.5 1.0
CB B:HIS170 4.2 25.5 1.0
CA B:HIS170 4.2 22.9 1.0
CD2 B:HIS145 4.2 24.4 1.0
NE2 B:HIS170 4.3 30.1 1.0
O B:HIS170 4.5 24.2 1.0
CG B:GLU37 4.6 40.1 1.0
CD2 B:HIS170 4.6 28.7 1.0
CG B:HIS145 4.6 23.5 1.0
ND1 B:HIS66 4.7 48.4 1.0
N B:ASN65 4.8 36.5 1.0
O B:HOH415 4.8 31.6 1.0
NE2 B:HIS172 4.9 27.5 1.0
C B:HIS170 4.9 23.0 1.0
CE1 B:HIS172 5.0 30.8 1.0
CB B:ASN65 5.0 41.2 1.0

Cobalt binding site 5 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 5 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co307

b:68.4
occ:1.00
 OD2 A:ASP160 2.9 34.4 1.0
ND1 A:HIS157 3.6 25.8 1.0
CG A:ASP160 3.7 32.7 1.0
CB A:ASP160 3.8 30.3 1.0
O A:HIS157 4.1 27.0 1.0
CE A:LYS183 4.2 38.2 1.0
CB A:PRO182 4.3 32.4 1.0
CD A:PRO182 4.3 31.0 1.0
CG A:PRO182 4.3 31.7 1.0
CB A:HIS157 4.4 25.0 1.0
CA A:HIS157 4.5 27.5 1.0
CG A:HIS157 4.5 25.5 1.0
CE1 A:HIS157 4.6 25.7 1.0
CG A:LYS183 4.6 36.6 1.0
CD A:LYS183 4.7 39.3 1.0
C A:HIS157 4.7 27.4 1.0
OD1 A:ASP160 4.9 32.4 1.0

Cobalt binding site 6 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 6 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co254

b:72.2
occ:1.00
 OH B:TYR247 3.1 34.7 1.0
NH2 B:ARG28 3.4 46.5 1.0
O B:HOH358 3.5 34.6 1.0
NH1 B:ARG28 3.6 46.2 1.0
CZ B:ARG28 4.0 46.3 1.0
CZ B:TYR247 4.2 33.3 1.0
CE2 B:TYR247 4.4 32.0 1.0
NE2 B:HIS21 4.5 34.5 1.0
CG2 B:ILE25 4.8 35.4 1.0
CE1 B:HIS21 4.8 33.2 1.0

Cobalt binding site 7 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 7 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co310

b:60.5
occ:1.00
 OD2 B:ASP160 3.3 24.1 1.0
O B:HOH405 3.7 39.6 1.0
NZ B:LYS183 3.8 37.6 1.0
ND1 B:HIS157 3.9 21.7 1.0
CB B:ASP160 3.9 24.7 1.0
CG B:ASP160 4.1 24.6 1.0
O B:HIS157 4.3 19.7 1.0
CD B:PRO182 4.5 27.2 1.0
CB B:PRO182 4.5 28.0 1.0
CB B:HIS157 4.5 20.1 1.0
CG B:LYS183 4.6 29.9 1.0
CG B:PRO182 4.6 25.7 1.0
CA B:HIS157 4.6 19.5 1.0
CG B:HIS157 4.7 20.5 1.0
C B:HIS157 4.8 19.1 1.0
CE1 B:HIS157 4.9 23.1 1.0
CE B:LYS183 5.0 35.5 1.0

Cobalt binding site 8 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 8 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co315

b:58.2
occ:1.00
 OD2 B:ASP190 3.0 26.0 1.0
N B:HIS170 3.1 21.5 1.0
N B:HIS172 3.2 23.1 1.0
O B:HOH415 3.3 31.6 1.0
CA B:HIS172 3.5 24.7 1.0
CB B:ASP8 3.5 37.8 1.0
O B:GLY192 3.8 20.6 1.0
CD2 B:HIS172 3.8 29.1 1.0
CA B:THR169 3.8 19.4 1.0
C B:THR169 3.8 20.9 1.0
CA B:HIS170 3.9 22.9 1.0
C B:HIS170 3.9 23.0 1.0
C B:GLY192 4.0 19.9 1.0
CB B:THR169 4.0 19.6 1.0
CG B:ASP190 4.0 21.0 1.0
N B:THR171 4.0 23.9 1.0
N B:ASP8 4.2 32.2 1.0
OD1 B:ASP190 4.2 23.5 1.0
N B:GLY192 4.3 19.0 1.0
CG B:HIS172 4.3 29.6 1.0
C B:THR171 4.4 24.9 1.0
CA B:ASP8 4.4 33.1 1.0
CA B:GLY192 4.4 20.2 1.0
N B:MET193 4.4 19.7 1.0
C B:HIS172 4.4 22.9 1.0
O B:HIS170 4.4 24.2 1.0
CB B:HIS172 4.5 25.9 1.0
CG B:ASP8 4.5 41.6 1.0
CG2 B:THR169 4.6 19.5 1.0
NE2 B:HIS172 4.6 27.5 1.0
CA B:THR171 4.7 25.0 1.0
CA B:MET193 4.7 22.2 1.0
OD2 B:ASP8 4.8 43.7 1.0
O B:THR169 4.9 19.2 1.0
N B:VAL173 5.0 21.0 1.0

Cobalt binding site 9 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 9 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 9 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co254

b:75.6
occ:1.00
 OD2 C:ASP160 3.0 30.4 1.0
NZ C:LYS183 3.5 43.6 1.0
CG C:ASP160 3.9 29.1 1.0
CB C:ASP160 4.0 29.3 1.0
ND1 C:HIS157 4.0 27.6 1.0
CB C:PRO182 4.2 34.3 1.0
CG C:PRO182 4.3 34.8 1.0
O D:HOH337 4.3 44.3 1.0
O C:HIS157 4.4 20.9 1.0
CD C:PRO182 4.5 33.9 1.0
CE C:LYS183 4.6 41.9 1.0
O C:HOH370 4.6 46.3 1.0
CG C:LYS183 4.7 35.5 1.0
CB C:HIS157 4.8 22.0 1.0
CG C:HIS157 4.9 25.6 1.0
CA C:HIS157 4.9 23.0 1.0

Cobalt binding site 10 out of 13 in 2z06

Go back to Cobalt Binding Sites List in 2z06
Cobalt binding site 10 out of 13 in the Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 10 of Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co336

b:60.8
occ:1.00
 OD2 C:ASP8 2.3 44.3 1.0
OD1 C:ASP8 2.4 44.6 1.0
CG C:ASP8 2.7 43.4 1.0
OD2 C:ASP190 2.9 30.2 1.0
N C:HIS172 3.1 31.7 1.0
N C:HIS170 3.2 25.1 1.0
CA C:HIS172 3.5 32.5 1.0
CD2 C:HIS172 3.5 35.1 1.0
N C:THR171 3.8 29.4 1.0
CG C:ASP190 3.9 28.4 1.0
O C:GLY192 3.9 33.3 1.0
C C:GLY192 3.9 31.2 1.0
CA C:HIS170 4.0 27.5 1.0
CA C:THR169 4.0 27.9 1.0
C C:HIS170 4.0 28.2 1.0
C C:THR169 4.0 26.9 1.0
OD1 C:ASP190 4.0 26.6 1.0
CB C:THR169 4.1 29.8 1.0
CB C:ASP8 4.1 34.7 1.0
C C:THR171 4.2 31.5 1.0
N C:MET193 4.3 31.2 1.0
CG C:HIS172 4.3 33.9 1.0
N C:GLY192 4.4 28.7 1.0
CA C:GLY192 4.4 29.2 1.0
CB C:HIS172 4.5 31.9 1.0
CB C:MET193 4.5 32.7 1.0
NE2 C:HIS172 4.5 36.2 1.0
C C:HIS172 4.5 32.0 1.0
CA C:MET193 4.5 31.6 1.0
CA C:THR171 4.5 32.1 1.0
N C:ASP8 4.6 28.6 1.0
O C:HIS170 4.7 28.2 1.0
CG2 C:THR169 4.8 29.6 1.0
N C:VAL173 4.8 30.9 1.0
O C:HOH339 5.0 28.4 1.0

Reference:

M.Kanagawa, S.Kuramitsu, S.Yokoyama. Crystal Structure of Uncharacterized Conserved Protein From Thermus Thermophilus To Be Published.
Page generated: Tue Jul 30 15:42:18 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy