Chemical elements
  Cobalt
    Isotopes
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    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
      2r2s
      2r5v
      2req
      2uzp
      2v0h
      2v3i
      2v3n
      2v3p
      2v3r
      2vc5
      2vc7
      2vke
      2vor
      2vos
      2w0f
      2wj0
      2wke
      2wna
      2wno
      2wyr
      2x2q
      2xdb
      2xdm
      2xg4
      2xg5
      2xij
      2xin
      2xiq
      2xjm
      2xk1
      2xln
      2xph
      2xre
      2xts
      2xvz
      2xwp
      2xwq
      2ywr
      2yye
      2z06
      2z8q
      2zc1
      2zdp
      2zgg
      2zu9
      2zzd
      312d
      313d
      314d
      331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Crystal Structure of Isdi in Complex With Cobalt Protoporphyrin IX (pdb 2zdp)






The binding sites of Cobalt atom in the structure of Crystal Structure of Isdi in Complex With Cobalt Protoporphyrin IX (pdb code 2zdp). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 2zdp structure was solved by W.C.LEE, M.L.RENIERE, E.P.SKAAR, M.E.P.MURPHY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)55.8-1.5
Space groupP1211
a (A)37.320
b (A)65.668
c (A)58.660
alpha (°)90.00
beta (°)107.81
gamma (°)90.00
Rfactor (%)18.1
Rfree (%)20.1


Cobalt Binding Sites:

Cobalt binding site 1 out of 2 in 2zdp


Cobalt binding site 1 out of 2 in 2zdp
Click to enlarge
stereopicture of Cobalt binding site 1 out of 2 in 2zdp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 2zdp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn6, A: Phe22, A: His76, A: Coh200, A: Cl201,

conact list:


AtomAtomDistance (A)
CoND2 A:Asn64.09
CoCZ A:Phe224.84
CoCE1 A:Phe224.55
CoNE2 A:His762.14
CoND1 A:His764.26
CoCD2 A:His763.06
CoCE1 A:His763.17
CoCG A:His764.23
CoC2D A:Coh2004.18
CoNC A:Coh2001.96
CoCHB A:Coh2003.33
CoCHC A:Coh2003.32
CoC3D A:Coh2004.19
CoNA A:Coh2001.94
CoCHA A:Coh2003.31
CoC2A A:Coh2004.18
CoC1D A:Coh2002.96
CoC4A A:Coh2002.96
CoC4B A:Coh2002.98
CoC3A A:Coh2004.18
CoC4C A:Coh2002.97
CoC2B A:Coh2004.20
CoC1C A:Coh2002.99
CoC2C A:Coh2004.20
CoND A:Coh2001.96
CoCHD A:Coh2003.30
CoC1B A:Coh2002.99
CoNB A:Coh2001.97
CoC3C A:Coh2004.20
CoC3B A:Coh2004.19
CoCO A:Coh2000.00
CoC4D A:Coh2002.96
CoC1A A:Coh2002.97
CoCL A:Cl2012.56

interactive model:


Cobalt binding site 2 out of 2 in 2zdp


Cobalt binding site 2 out of 2 in 2zdp
Click to enlarge
stereopicture of Cobalt binding site 2 out of 2 in 2zdp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 2zdp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asn6, B: Phe22, B: His76, B: Coh200, B: Cl202,

conact list:


AtomAtomDistance (A)
CoND2 B:Asn64.08
CoCZ B:Phe224.79
CoCE1 B:Phe224.49
CoNE2 B:His762.13
CoND1 B:His764.25
CoCD2 B:His763.05
CoCE1 B:His763.17
CoCG B:His764.23
CoC2D B:Coh2004.19
CoNC B:Coh2001.94
CoCHB B:Coh2003.32
CoCHC B:Coh2003.30
CoC3D B:Coh2004.21
CoNA B:Coh2001.94
CoCHA B:Coh2003.28
CoC2A B:Coh2004.18
CoC1D B:Coh2002.98
CoC4A B:Coh2002.97
CoC4B B:Coh2002.98
CoC3A B:Coh2004.18
CoC4C B:Coh2002.95
CoC2B B:Coh2004.23
CoC1C B:Coh2002.96
CoC2C B:Coh2004.17
CoND B:Coh2001.96
CoCHD B:Coh2003.30
CoC1B B:Coh2003.01
CoNB B:Coh2001.99
CoC3C B:Coh2004.15
CoC3B B:Coh2004.20
CoCO B:Coh2000.00
CoC4D B:Coh2002.97
CoC1A B:Coh2002.96
CoCL B:Cl2022.54

interactive model:




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