Cobalt in PDB 2zu9: Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii

All present enzymatic activity of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii:
2.4.1.217;

The structure of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii, PDB code: 2zu9 was solved by T.Kawamura, N.Watanabe, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.91 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.655, 84.867, 83.565, 90.00, 102.00, 90.00
R / Rfree (%)	22.4 / 25.6

The binding sites of Cobalt atom in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii (pdb code 2zu9). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii, PDB code: 2zu9:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ A:Co397 b:64.3 occ:1.00 ND1 A:HIS312 2.1 42.5 1.0 O1B A:GDP396 2.3 51.8 1.0 O1A A:GDP396 2.4 48.3 1.0 OD2 A:ASP170 2.6 35.5 1.0 CE1 A:HIS312 2.7 42.0 1.0 PB A:GDP396 3.1 51.2 1.0 OD1 A:ASP170 3.2 34.4 1.0 O3B A:GDP396 3.2 50.9 1.0 PA A:GDP396 3.2 46.0 1.0 CG A:ASP170 3.2 32.9 1.0 CG A:HIS312 3.3 41.1 1.0 NZ A:LYS315 3.4 48.4 1.0 O5' A:GDP396 3.5 43.9 1.0 O3A A:GDP396 3.6 49.1 1.0 NE2 A:HIS312 3.9 41.9 1.0 CB A:HIS312 3.9 40.3 1.0 CD2 A:HIS312 4.2 42.0 1.0 O A:GLU313 4.4 42.3 1.0 OD2 A:ASP168 4.6 37.5 1.0 O2B A:GDP396 4.6 51.3 1.0 CE A:LYS315 4.7 47.3 1.0 CB A:ASP170 4.7 30.4 1.0 O2A A:GDP396 4.8 48.4 1.0 C5' A:GDP396 4.9 36.5 1.0 N A:GLU313 4.9 41.5 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ B:Co395 b:53.5 occ:1.00 O1A A:GDP395 2.0 46.5 1.0 O1B A:GDP395 2.1 48.0 1.0 ND1 B:HIS312 2.3 45.2 1.0 OD2 B:ASP170 2.3 29.1 1.0 O B:HOH410 2.5 34.0 1.0 CE1 B:HIS312 3.1 45.4 1.0 CG B:ASP170 3.1 28.5 1.0 OD1 B:ASP170 3.1 28.7 1.0 PA A:GDP395 3.1 45.9 1.0 PB A:GDP395 3.3 48.2 1.0 CG B:HIS312 3.4 44.2 1.0 O5' A:GDP395 3.6 42.4 1.0 O3A A:GDP395 3.7 46.4 1.0 CB B:HIS312 3.8 42.7 1.0 O3B A:GDP395 4.1 48.2 1.0 O B:GLU313 4.2 50.8 1.0 NE2 B:HIS312 4.3 45.4 1.0 CD2 B:HIS312 4.4 45.0 1.0 CB B:ASP170 4.5 27.5 1.0 N B:GLU313 4.6 46.8 1.0 O2A A:GDP395 4.6 45.9 1.0 NZ B:LYS315 4.7 59.5 1.0 OD2 B:ASP168 4.7 36.5 1.0 O2B A:GDP395 4.8 47.8 1.0 CD B:LYS315 5.0 59.4 1.0

T.Kawamura, N.Watanabe, I.Tanaka. Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Pyrococcus Horikoshii To Be Published.