Cobalt in PDB 331d: Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S

The structure of Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S, PDB code: 331d was solved by B.Pan, C.Ban, M.Wahl, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	20.410, 29.650, 51.860, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / n/a

The binding sites of Cobalt atom in the Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S (pdb code 331d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S, PDB code: 331d:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S within 5.0Å range: probe atom residue distance (Å) B Occ A:Co15 b:24.8 occ:1.00 CO A:NCO15 0.0 24.8 1.0 N3 A:NCO15 2.1 20.0 1.0 N5 A:NCO15 2.1 20.9 1.0 N1 A:NCO15 2.1 21.6 1.0 N4 A:NCO15 2.1 22.0 1.0 N2 A:NCO15 2.1 21.6 1.0 N6 A:NCO15 2.1 21.3 1.0 O A:HOH60 3.6 41.2 1.0 O A:HOH70 3.8 59.6 1.0 OP1 A:DC4 3.8 20.6 1.0 O6 A:DG5 3.8 15.9 1.0 O A:HOH19 3.8 27.5 1.0 N7 A:DG5 4.1 14.2 1.0 O A:HOH35 4.2 66.5 1.0 O A:HOH30 4.6 23.4 1.0 C6 A:DG5 4.6 13.4 1.0 C5 A:DG5 4.7 12.9 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of D(Gcgcgcg) with 5'-Overhang G'S within 5.0Å range: probe atom residue distance (Å) B Occ A:Co16 b:38.3 occ:1.00 CO A:NCO16 0.0 38.3 1.0 N5 A:NCO16 2.1 35.1 1.0 N3 A:NCO16 2.1 35.7 1.0 N4 A:NCO16 2.1 37.1 1.0 N2 A:NCO16 2.1 36.3 1.0 N1 A:NCO16 2.1 35.0 1.0 N6 A:NCO16 2.2 35.2 1.0 O A:HOH66 3.7 85.3 1.0 O A:HOH42 3.9 31.4 1.0 O A:HOH20 4.0 23.9 1.0 O A:HOH30 4.2 23.4 1.0 OP2 A:DC4 4.2 21.9 1.0 O A:HOH25 5.0 18.8 1.0

B.Pan, C.Ban, M.C.Wahl, M.Sundaralingam. Crystal Structure of D(Gcgcgcg) with 5'-Overhang G Residues. Biophys.J. V. 73 1553 1997.
ISSN: ISSN 0006-3495
PubMed: 9284322