Cobalt in PDB 362d: The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers

The structure of The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers, PDB code: 362d was solved by N.A.Harper, J.A.Brannigan, M.Buck, R.J.Lewis, M.H.Moore, B.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	21.162, 28.670, 44.335, 90.00, 90.00, 90.00
R / Rfree (%)	12 / 17.3

The binding sites of Cobalt atom in the The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers (pdb code 362d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers, PDB code: 362d:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers within 5.0Å range: probe atom residue distance (Å) B Occ A:Co13 b:8.1 occ:1.00 CO A:NCO13 0.0 8.1 1.0 N4 A:NCO13 1.9 15.3 1.0 N1 A:NCO13 2.0 10.8 1.0 N3 A:NCO13 2.0 9.6 1.0 N5 A:NCO13 2.0 10.3 1.0 N2 A:NCO13 2.0 12.8 1.0 N6 A:NCO13 2.0 9.8 1.0 O A:HOH71 3.9 12.1 1.0 OP1 A:DA6 4.0 6.0 1.0 O A:HOH24 4.0 8.9 1.0 O B:HOH74 4.1 13.2 1.0 OP1 B:DA12 4.1 9.0 1.0 O A:HOH29 4.1 11.3 1.0 O B:HOH28 4.3 7.3 1.0 O B:HOH33 4.3 11.0 1.0 O B:HOH32 4.3 12.7 1.0 O A:HOH44 4.6 15.5 1.0 OP2 A:DA6 4.7 7.6 1.0 O A:HOH79 4.7 21.3 1.0 P A:DA6 4.9 5.8 1.0

Cobalt binding site 2 out of 2 in the The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Structure of D(Tgcgca)2 and A Comparison to Other Z-Dna Hexamers within 5.0Å range: probe atom residue distance (Å) B Occ A:Co14 b:10.1 occ:1.00 CO A:NCO14 0.0 10.1 1.0 N5 A:NCO14 2.0 10.7 1.0 N4 A:NCO14 2.0 13.1 1.0 N3 A:NCO14 2.0 14.1 1.0 N6 A:NCO14 2.0 8.8 1.0 N1 A:NCO14 2.0 10.1 1.0 N2 A:NCO14 2.0 8.2 1.0 O A:HOH49 3.8 15.3 1.0 OP1 A:DC3 3.8 13.5 1.0 O6 A:DG4 3.9 5.1 1.0 O A:HOH65 4.1 11.0 1.0 O B:HOH23 4.3 9.2 1.0 N7 A:DG4 4.4 5.5 1.0 C6 A:DG4 4.8 3.7 1.0 C5 A:DG4 5.0 4.2 1.0

A.Harper, J.A.Brannigan, M.Buck, L.Hewitt, R.J.Lewis, M.H.Moore, B.Schneider. Structure of D(Tgcgca)2 and A Comparison to Other Dna Hexamers. Acta Crystallogr.,Sect.D V. 54 1273 1998.
ISSN: ISSN 0907-4449
PubMed: 10089504
DOI: 10.1107/S0907444998002807