Atomistry » Cobalt » PDB 2xwq-3bbi » 376d
Atomistry »
  Cobalt »
    PDB 2xwq-3bbi »
      376d »

Cobalt in PDB 376d: A Zipper-Like Dna Duplex D(Gcgaaagct)

Protein crystallography data

The structure of A Zipper-Like Dna Duplex D(Gcgaaagct), PDB code: 376d was solved by W.B.T.Cruse, W.Shepard, T.Prange, E.Delalfortelle, R.Fourme, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 37.560, 37.560, 65.390, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 24.1

Other elements in 376d:

The structure of A Zipper-Like Dna Duplex D(Gcgaaagct) also contains other interesting chemical elements:

Bromine (Br) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the A Zipper-Like Dna Duplex D(Gcgaaagct) (pdb code 376d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the A Zipper-Like Dna Duplex D(Gcgaaagct), PDB code: 376d:

Cobalt binding site 1 out of 1 in 376d

Go back to Cobalt Binding Sites List in 376d
Cobalt binding site 1 out of 1 in the A Zipper-Like Dna Duplex D(Gcgaaagct)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of A Zipper-Like Dna Duplex D(Gcgaaagct) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co10

b:13.1
occ:0.33
CO A:NCO10 0.0 13.1 0.3
N2 A:NCO10 2.0 12.2 1.0
N1 A:NCO10 2.0 11.4 1.0
O A:HOH14 3.9 5.4 1.0
O6 A:DG3 4.1 16.0 1.0
N7 A:DG3 4.3 16.4 1.0
O A:HOH23 4.3 53.2 1.0
C6 A:DG3 5.0 17.0 1.0

Reference:

W.Shepard, W.B.Cruse, R.Fourme, E.De La Fortelle, T.Prange. A Zipper-Like Duplex in Dna: the Crystal Structure of D(Gcgaaagct) at 2.1 A Resolution. Structure V. 6 849 1998.
ISSN: ISSN 0969-2126
PubMed: 9687367
DOI: 10.1016/S0969-2126(98)00087-2
Page generated: Sun Dec 13 10:39:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy