Cobalt in PDB 3abq: Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol

All present enzymatic activity of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol:
4.3.1.7;

The structure of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol, PDB code: 3abq was solved by N.Shibata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.05
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	241.870, 241.870, 76.290, 90.00, 90.00, 120.00
R / Rfree (%)	23 / 26.9

The binding sites of Cobalt atom in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol (pdb code 3abq). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol, PDB code: 3abq:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol within 5.0Å range: probe atom residue distance (Å) B Occ B:Co601 b:29.7 occ:1.00 CO B:B12601 0.0 29.7 1.0 N21 B:B12601 1.9 21.2 1.0 N23 B:B12601 1.9 20.4 1.0 N24 B:B12601 1.9 29.1 1.0 N22 B:B12601 1.9 27.8 1.0 N3B B:B12601 2.3 27.9 1.0 C19 B:B12601 2.8 29.1 1.0 C1 B:B12601 2.9 29.0 1.0 C14 B:B12601 2.9 23.6 1.0 C9 B:B12601 2.9 23.4 1.0 C4 B:B12601 3.0 29.3 1.0 C11 B:B12601 3.0 35.3 1.0 C6 B:B12601 3.0 23.7 1.0 C16 B:B12601 3.0 23.9 1.0 O B:HOH917 3.0 14.1 1.0 C9B B:B12601 3.3 30.0 1.0 C2B B:B12601 3.3 29.5 1.0 C10 B:B12601 3.4 32.3 1.0 C15 B:B12601 3.4 20.4 1.0 C5 B:B12601 3.4 19.8 1.0 C20 B:B12601 3.6 35.3 1.0 C4B B:B12601 3.7 32.9 1.0 C2 B:B12601 4.1 26.2 1.0 C18 B:B12601 4.1 18.5 1.0 C13 B:B12601 4.2 24.6 1.0 C3 B:B12601 4.2 23.3 1.0 C17 B:B12601 4.2 24.4 1.0 C8 B:B12601 4.2 22.7 1.0 C12 B:B12601 4.2 21.9 1.0 C7 B:B12601 4.3 30.5 1.0 N1B B:B12601 4.5 24.6 1.0 C26 B:B12601 4.5 27.4 1.0 C8B B:B12601 4.5 29.5 1.0 C42 B:B12601 4.5 30.6 1.0 C48 B:B12601 4.7 26.1 1.0 C46 B:B12601 4.9 27.2 1.0 C53 B:B12601 4.9 22.4 1.0 C35 B:B12601 4.9 24.8 1.0 C54 B:B12601 5.0 34.1 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and 2-Amino-1-Propanol within 5.0Å range: probe atom residue distance (Å) B Occ D:Co601 b:35.2 occ:1.00 CO D:B12601 0.0 35.2 1.0 N21 D:B12601 1.9 14.6 1.0 N24 D:B12601 1.9 26.1 1.0 N23 D:B12601 1.9 27.6 1.0 N22 D:B12601 1.9 39.2 1.0 N3B D:B12601 2.4 35.5 1.0 C19 D:B12601 2.8 25.3 1.0 C1 D:B12601 2.9 33.7 1.0 C9 D:B12601 2.9 35.1 1.0 C14 D:B12601 2.9 30.5 1.0 C4 D:B12601 2.9 39.2 1.0 C11 D:B12601 2.9 41.0 1.0 C6 D:B12601 3.0 24.6 1.0 C16 D:B12601 3.0 27.3 1.0 C10 D:B12601 3.3 44.3 1.0 C2B D:B12601 3.4 41.1 1.0 C9B D:B12601 3.4 37.6 1.0 C5 D:B12601 3.4 30.8 1.0 C15 D:B12601 3.4 34.8 1.0 C20 D:B12601 3.6 30.9 1.0 C4B D:B12601 3.9 44.4 1.0 C18 D:B12601 4.1 32.8 1.0 C2 D:B12601 4.1 25.9 1.0 C13 D:B12601 4.2 32.2 1.0 C3 D:B12601 4.2 19.8 1.0 C17 D:B12601 4.2 34.9 1.0 C8 D:B12601 4.2 40.3 1.0 C12 D:B12601 4.3 38.6 1.0 C7 D:B12601 4.3 36.1 1.0 C42 D:B12601 4.4 50.6 1.0 N1B D:B12601 4.5 25.9 1.0 C8B D:B12601 4.6 49.2 1.0 C26 D:B12601 4.6 30.1 1.0 C38 D:B12601 4.6 32.6 0.5 O39 D:B12601 4.6 36.9 0.5 C48 D:B12601 4.8 40.9 1.0 N40 D:B12601 4.8 35.8 0.5 C35 D:B12601 4.9 31.4 1.0 C53 D:B12601 4.9 36.1 1.0 C54 D:B12601 5.0 39.7 1.0 C41 D:B12601 5.0 47.2 1.0

N.Shibata, H.Tamagaki, N.Hieda, K.Akita, H.Komori, Y.Shomura, S.Terawaki, K.Mori, N.Yasuoka, Y.Higuchi, T.Toraya. Crystal Structures of Ethanolamine Ammonia-Lyase Complexed with Coenzyme B12 Analogs and Substrates. J.Biol.Chem. V. 285 26484 2010.
ISSN: ISSN 0021-9258
PubMed: 20519496
DOI: 10.1074/JBC.M110.125112